2WX3 | pdb_00002wx3

Asymmetric trimer of the human DCP1a C-terminal domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	DCP1-trimerization domain	8046081	4004864	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	DCP1-trimerization domain	8090904	3002468	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	mRNA_decap_C	e2wx3A1	A: extended segments	X: mRNA-decapping enzyme 1A trimerization domain (From Topology)	H: mRNA-decapping enzyme 1A trimerization domain (From Topology)	T: mRNA-decapping enzyme 1A trimerization domain	F: mRNA_decap_C	ECOD (1.6)
B	mRNA_decap_C	e2wx3B1	A: extended segments	X: mRNA-decapping enzyme 1A trimerization domain (From Topology)	H: mRNA-decapping enzyme 1A trimerization domain (From Topology)	T: mRNA-decapping enzyme 1A trimerization domain	F: mRNA_decap_C	ECOD (1.6)
C	mRNA_decap_C	e2wx3C1	A: extended segments	X: mRNA-decapping enzyme 1A trimerization domain (From Topology)	H: mRNA-decapping enzyme 1A trimerization domain (From Topology)	T: mRNA-decapping enzyme 1A trimerization domain	F: mRNA_decap_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	6.10.140.2030	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.2030	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.2030	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF16741	mRNA-decapping enzyme C-terminus (mRNA_decap_C)	mRNA-decapping enzyme C-terminus	The C-terminal domain of mRNA-decapping enzyme in Metazoa is responsible for trimerisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	MRNA-DECAPPING ENZYME 1A	RNA binding binding nucleic acid binding mRNA binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity cytoskeletal protein binding protein binding kinesin binding identical protein binding pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides RNA binding binding nucleic acid binding mRNA binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity cytoskeletal protein binding protein binding kinesin binding identical protein binding pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity	regulation of cellular process negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process regulation of biological process negative regulation of metabolic process regulation of cellular process negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process regulation of biological process negative regulation of metabolic process positive regulation of mRNA metabolic process primary metabolic process nucleobase-containing compound catabolic process positive regulation of RNA metabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process deadenylation-dependent decapping of nuclear-transcribed mRNA regulation of metabolic process RNA decapping nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process mRNA destabilization regulation of mRNA catabolic process negative regulation of cellular process mRNA methylguanosine-cap decapping positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process nuclear-transcribed mRNA catabolic process RNA destabilization biological regulation regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of catabolic process regulation of mRNA stability negative regulation of biosynthetic process positive regulation of mRNA catabolic process regulation of RNA stability cellular process regulation of mRNA metabolic process deadenylation-independent decapping of nuclear-transcribed mRNA nuclear-transcribed mRNA catabolic process, deadenylation-independent decay localization protein localization to cytoplasmic stress granule protein localization to organelle macromolecule localization intracellular protein localization nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle cytoplasm supramolecular complex ribonucleoprotein granule membrane cytosol somatodendritic compartment cell projection intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle cytoplasm supramolecular complex ribonucleoprotein granule membrane cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection P-body membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR010334	mRNA-decapping enzyme subunit 1	Family
A, B, C	IPR031953	mRNA-decapping enzyme, C-terminal	Domain
A, B, C	IPR011993	PH-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q9NPI6	acute myeloid leukemia lung adenocarcinoma non-alcoholic fatty liver disease ovarian cancer astrocytic tumor lung carcinoma non-small cell lung carcinoma attention deficit hyperactivity disorder, inattentive type medulloblastoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.