2WQ8 | pdb_00002wq8

Glycan labelling using engineered variants of galactose oxidase obtained by directed evolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2wq8a3	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Fusarium graminearum ) [TaxId: 5518 ],	SCOPe (2.08)
A	d2wq8a1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Fusarium graminearum ) [TaxId: 5518 ],	SCOPe (2.08)
A	d2wq8a2	All beta proteins	7-bladed beta-propeller	Galactose oxidase, central domain	Galactose oxidase, central domain	automated matches	(Fusarium graminearum ) [TaxId: 5518 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	galactose-binding domain-like	8041133	3000087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Galactose oxidase, central domain	8042844	3001660	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8054887	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rhodanese	e2wq8A1	A: a/b three-layered sandwiches	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain	T: PTS-regulatory domain, PRD	F: Rhodanese	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
A	2.130.10.80	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	GALACTOSE OXIDASE	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor oxidoreductase activity galactose oxidase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009880	Glyoxal oxidase, N-terminal	Domain
A	IPR000421	Coagulation factor 5/8, C-terminal domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR015202	Galactose oxidase-like, Early set domain	Domain
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR037293	Galactose oxidase, central domain superfamily	Homologous Superfamily
A	IPR006652	Kelch repeat type 1	Repeat
A	IPR011043	Galactose oxidase/kelch, beta-propeller	Homologous Superfamily
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.