2WK1 | pdb_00002wk1

Structure of the O-methyltransferase NovP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2wk1a_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	TylF O-methyltransferase-like	S-adenosyl-L-methionine-dependent O-methyltransferase NovP	STREPTOMYCES SPHEROIDES (Actinoalloteichus caeruleus ) [TaxId: 2893586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MycF/TylF-like	8047497	4005667	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090800	3000118	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TylF	e2wk1A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: TylF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	NOVP	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	methylation metabolic process cellular process carbohydrate derivative biosynthetic process phenylpropanoid metabolic process glycosyl compound biosynthetic process glycoside metabolic process coumarin metabolic process carbohydrate derivative metabolic process phenylpropanoid biosynthetic process secondary metabolic process antibiotic biosynthetic process ether biosynthetic process glycoside biosynthetic process methylation metabolic process cellular process carbohydrate derivative biosynthetic process phenylpropanoid metabolic process glycosyl compound biosynthetic process glycoside metabolic process coumarin metabolic process carbohydrate derivative metabolic process phenylpropanoid biosynthetic process secondary metabolic process antibiotic biosynthetic process ether biosynthetic process glycoside biosynthetic process antibiotic metabolic process coumarin biosynthetic process secondary metabolite biosynthetic process biosynthetic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process novobiocin biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008884	Macrocin-O-methyltransferase	Family
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.