2WFS | pdb_00002wfs

Fitting of influenza virus NP structure into the 9-fold symmetryzed cryoEM reconstruction of an active RNP particle.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flu NP-like	8085205	3001484	SCOP2B (2022-06-29)
A	SCOP2 Family	Flu NP-like	8085204	4002613	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Flu NP-like	8085205	3001484	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	PI3K_C2	e2wfsI3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
I	Acetyltransf_9	e2wfsI1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
H	PI3K_C2	e2wfsH3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
H	Acetyltransf_9	e2wfsH1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
G	PI3K_C2	e2wfsG3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
G	Acetyltransf_9	e2wfsG1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
F	PI3K_C2	e2wfsF3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
F	Acetyltransf_9	e2wfsF1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
E	PI3K_C2	e2wfsE3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
E	Acetyltransf_9	e2wfsE1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
D	PI3K_C2	e2wfsD3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
D	Acetyltransf_9	e2wfsD1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
C	PI3K_C2	e2wfsC3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
C	Acetyltransf_9	e2wfsC1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
B	PI3K_C2	e2wfsB3	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
B	Acetyltransf_9	e2wfsB1	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)
A	Peptidase_M4,Peptidase_M4_C	e2wfsA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: Peptidase_M4,Peptidase_M4_C	ECOD (develop294)
A	Acetyltransf_9	e2wfsA2	A: alpha bundles	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	NUCLEOPROTEIN	structural molecule activity RNA binding binding nucleic acid binding identical protein binding protein binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part extracellular region cell periphery plasma membrane membrane host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cellular component cellular anatomical structure host cell other organism part extracellular region cell periphery plasma membrane membrane host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR002141	Influenza virus nucleoprotein (NP)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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