2WD6 | pdb_00002wd6

Crystal structure of the Variable Domain of the Streptococcus gordonii Surface Protein SspB

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	V-region of surface antigen I/II (SA I/II, PAC)	8076866	4002134	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	V-region of surface antigen I/II (SA I/II, PAC)	8076867	3000865	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	V-region of surface antigen I/II (SA I/II, PAC)	8076867	3000865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L36	e2wd6B1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: Ribosomal_L36	ECOD (develop294)
A	Glutaredoxin	e2wd6A1	A: alpha bundles	X: Alpha-beta plaits	H: HMA-related	T: HMA, heavy metal-associated domain	F: Glutaredoxin	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.530.10	Mainly Beta	Sandwich	Major cell-surface adhesin PAc	Major cell-surface adhesin PAc	CATH (4.3.0)
A	2.60.530.10	Mainly Beta	Sandwich	Major cell-surface adhesin PAc	Major cell-surface adhesin PAc	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	AGGLUTININ RECEPTOR	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR009578	Cell surface antigen I/II A repeat	Repeat
A, B	IPR013574	Glucan-binding protein C/Surface antigen I/II, V-domain	Domain
A, B	IPR041324	Antigen I/II, N-terminal	Domain
A, B	IPR032300	Cell surface antigen, C-terminal	Domain
A, B	IPR036234	Glucan-binding protein C/Surface antigen I/II, V-domain superfamily	Homologous Superfamily
A, B	IPR026345	Adhesin isopeptide-forming adherence domain	Domain
A, B	IPR021197	Cross-wall-targeting lipoprotein motif	Conserved Site
A, B	IPR019931	LPXTG cell wall anchor motif	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.