The open structure of MscS
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Mechanosensitive channel protein MscS (YggB), middle domain | 8025417 | 4002640 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8025419 | 4003249 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8025420 | 4003391 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8037796 | 3000419 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Mechanosensitive channel protein MscS (YggB), C-terminal domain | 8037798 | 3000496 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Mechanosensitive channel protein MscS (YggB), transmembrane region | 8037799 | 3000754 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G | MS_channel_2nd | e2vv5G1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| G | MS_channel_1st | e2vv5G2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| G | MS_channel_3rd | e2vv5G3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| F | MS_channel_2nd | e2vv5F1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| F | MS_channel_1st | e2vv5F2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| F | MS_channel_3rd | e2vv5F3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| E | MS_channel_2nd | e2vv5E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| E | MS_channel_1st | e2vv5E2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| E | MS_channel_3rd | e2vv5E3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| D | MS_channel_2nd | e2vv5D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| D | MS_channel_1st | e2vv5D2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| D | MS_channel_3rd | e2vv5D3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| C | MS_channel_2nd | e2vv5C1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| C | MS_channel_1st | e2vv5C2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| C | MS_channel_3rd | e2vv5C3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| B | MS_channel_2nd | e2vv5B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| B | MS_channel_1st | e2vv5B2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| B | MS_channel_3rd | e2vv5B3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
| A | MS_channel_2nd | e2vv5A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: MS_channel_2nd | ECOD (1.6) |
| A | MS_channel_1st | e2vv5A2 | A: alpha bundles | X: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | H: Mechanosensitive channel protein MscS (YggB), transmembrane region (From Topology) | T: Mechanosensitive channel protein MscS (YggB), transmembrane region | F: MS_channel_1st | ECOD (1.6) |
| A | MS_channel_3rd | e2vv5A3 | A: a+b two layers | X: Alpha-beta plaits | H: Mechanosensitive channel protein MscS (YggB), C-terminal domain (From Topology) | T: Mechanosensitive channel protein MscS (YggB), C-terminal domain | F: MS_channel_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00924 | Mechanosensitive ion channel, beta-domain (MS_channel_2nd) | Mechanosensitive ion channel, beta-domain | This entry includes small conductance mechanosensitive channels (MscS), which assembles to a homoheptameric complex [1-6]. Each monomer consists of a N-terminal transmembrane region and a large cytoplasmic segment composed of a five-stranded antipara ... | Domain | |
| PF21088 | Mechanosensitive ion channel, transmembrane helices 2/3 (MS_channel_1st) | Mechanosensitive ion channel, transmembrane helices 2/3 | This entry includes small conductance mechanosensitive channels (MscS), which assembles to a homoheptameric complex [1-6]. Each monomer consists of a N-terminal transmembrane region and a large cytoplasmic segment composed of a five-stranded antipara ... | Domain | |
| PF21082 | Mechanosensitive ion channel MscS, C-terminal (MS_channel_3rd) | Mechanosensitive ion channel MscS, C-terminal | This entry includes small conductance mechanosensitive channels (MscS), which assembles to a homoheptameric complex [1-6]. Each monomer consists of a N-terminal transmembrane region and a large cytoplasmic segment composed of a five-stranded antipara ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006685 | Mechanosensitive ion channel MscS | Domain | |
| IPR011014 | Mechanosensitive ion channel MscS, transmembrane-2 | Homologous Superfamily | |
| IPR008910 | Mechanosensitive ion channel, conserved TM helix | Repeat | |
| IPR011066 | Mechanosensitive ion channel MscS, C-terminal domain superfamily | Homologous Superfamily | |
| IPR023408 | Mechanosensitive ion channel MscS, beta-domain superfamily | Homologous Superfamily | |
| IPR049142 | Mechanosensitive ion channel, transmembrane helices 2/3 | Domain | |
| IPR010920 | LSM domain superfamily | Homologous Superfamily | |
| IPR006686 | Mechanosensitive ion channel MscS, conserved site | Conserved Site | |
| IPR049278 | Mechanosensitive ion channel MscS, C-terminal domain | Domain | |
| IPR045275 | Mechanosensitive ion channel MscS, archaea/bacteria type | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Mechanosensitive | MscS mechanosensitive channel in the open form |














