Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d2vq0c1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Sobemovirus coat protein | (Sesbania mosaic virus ) [TaxId: 12558 ], | SCOPe (2.08) |
| B | d2vq0b1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Sobemovirus coat protein | (Sesbania mosaic virus ) [TaxId: 12558 ], | SCOPe (2.08) |
| A | d2vq0a1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Sobemovirus coat protein | (Sesbania mosaic virus ) [TaxId: 12558 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040784 | 3000918 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040784 | 3000918 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040784 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | TNF | e2vq0C1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
| B | TNF | e2vq0B1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
| A | TNF | e2vq0A1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TNF | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| COAT PROTEIN | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
| IPR000937 | Icosahedral viral capsid protein, S domain | Domain |
