2VOY | pdb_00002voy

CryoEM model of CopA, the copper transporting ATPase from Archaeoglobus fulgidus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyHAD-like 8037720 3001890 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMetal cation-transporting ATPase, ATP-binding domain N 8037721 3000981 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHMA, heavy metal-associated domain 8038294 3001159 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FE1-E2_ATPase_Ne2voyF1 A: beta sandwichesX: jelly-rollH: Calcium ATPase, transduction domain A (From Topology)T: Calcium ATPase, transduction domain AF: E1-E2_ATPase_NECOD (1.6)
IHydrolase_3_1e2voyI1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: HAD-likeF: Hydrolase_3_1ECOD (1.6)
JP-type_ATPase_Cu-likee2voyJ1 A: a+b complex topologyX: Metal cation-transporting ATPase, ATP-binding domain (From Topology)H: Metal cation-transporting ATPase, ATP-binding domain (From Topology)T: Metal cation-transporting ATPase, ATP-binding domainF: P-type_ATPase_Cu-likeECOD (1.6)
AHMAe2voyA1 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00122P-type ATPase actuator domain (E1-E2_ATPase)P-type ATPase actuator domainThis entry describes the actuator (A) domain found in P-type ATPases (also known as E1-E2 ATPases). The A domain serves as a built-in protein phosphatase that functions to dephosphorylate the phosphorylated P domain. The A domain is the smallest of t ...This entry describes the actuator (A) domain found in P-type ATPases (also known as E1-E2 ATPases). The A domain serves as a built-in protein phosphatase that functions to dephosphorylate the phosphorylated P domain. The A domain is the smallest of the three cytoplasmic domains. It consists of a distorted jellyroll structure and two short helices [1-2].
Domain
PF00702haloacid dehalogenase-like hydrolase (Hydrolase)haloacid dehalogenase-like hydrolaseThis family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted fo ...This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain [1]. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria [2].
Domain
PF00702haloacid dehalogenase-like hydrolase (Hydrolase)haloacid dehalogenase-like hydrolaseThis family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted fo ...This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain [1]. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria [2].
Domain
PF00690Cation transporter/ATPase, N-terminus (Cation_ATPase_N)Cation transporter/ATPase, N-terminusMembers of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Domain
PF00403Heavy-metal-associated domain (HMA)Heavy-metal-associated domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
CATION-TRANSPORTING ATPASE, P-TYPE
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
CATION-TRANSPORTING ATPASE
CATION-TRANSPORTING ATPASE
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
POTENTIAL COPPER-TRANSPORTING ATPASE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR017969Heavy-metal-associated, conserved siteConserved Site
IPR023214HAD superfamilyHomologous Superfamily
IPR006121Heavy metal-associated domain, HMADomain
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR027256P-type ATPase, subfamily IBFamily
IPR018303P-type ATPase, phosphorylation sitePTM
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR006122Heavy metal-associated domain, copper ion-bindingDomain
IPR036163Heavy metal-associated domain superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR017969Heavy-metal-associated, conserved siteConserved Site
IPR023214HAD superfamilyHomologous Superfamily
IPR006121Heavy metal-associated domain, HMADomain
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR027256P-type ATPase, subfamily IBFamily
IPR018303P-type ATPase, phosphorylation sitePTM
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR006122Heavy metal-associated domain, copper ion-bindingDomain
IPR036163Heavy metal-associated domain superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR017969Heavy-metal-associated, conserved siteConserved Site
IPR023214HAD superfamilyHomologous Superfamily
IPR006121Heavy metal-associated domain, HMADomain
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR027256P-type ATPase, subfamily IBFamily
IPR018303P-type ATPase, phosphorylation sitePTM
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR006122Heavy metal-associated domain, copper ion-bindingDomain
IPR036163Heavy metal-associated domain superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR004014Cation-transporting P-type ATPase, N-terminalDomain
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR006068Cation-transporting P-type ATPase, C-terminalDomain
IPR018303P-type ATPase, phosphorylation sitePTM
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR023214HAD superfamilyHomologous Superfamily
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily
IPR005782P-type ATPase, subfamily IIA, SERCA-typeFamily
IPR017969Heavy-metal-associated, conserved siteConserved Site
IPR023214HAD superfamilyHomologous Superfamily
IPR006121Heavy metal-associated domain, HMADomain
IPR008250P-type ATPase, A domain superfamilyHomologous Superfamily
IPR001757P-type ATPaseFamily
IPR044492P-type ATPase, haloacid dehalogenase domainDomain
IPR027256P-type ATPase, subfamily IBFamily
IPR018303P-type ATPase, phosphorylation sitePTM
IPR036412HAD-like superfamilyHomologous Superfamily
IPR023298P-type ATPase, transmembrane domain superfamilyHomologous Superfamily
IPR006122Heavy metal-associated domain, copper ion-bindingDomain
IPR036163Heavy metal-associated domain superfamilyHomologous Superfamily
IPR023299P-type ATPase, cytoplasmic domain NHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD