crystal structure of a repair endonuclease from Pyrococcus abyssi
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | CagX | e2vldB1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: CagX | ECOD (develop294) |
| A | NucS_N | e2vldA1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: SAM/DNA-glycosylase | T: SAM domain-like | F: NucS_N | ECOD (develop294) |
| A | NucS_C | e2vldA2 | A: alpha bundles | X: TIM beta/alpha-barrel | H: SAM/DNA-glycosylase | T: SAM domain-like | F: NucS_C | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.70.180.20 | Mainly Beta | Distorted Sandwich | Protein Yojf | Chain: A | CATH (4.3.0) |
| B | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
| A | 2.70.180.20 | Mainly Beta | Distorted Sandwich | Protein Yojf | Chain: A | CATH (4.3.0) |
| A | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR048301 | Endonuclease NucS, C-terminal domain | Domain | |
| IPR048302 | Endonuclease NucS, N-terminal PH-like domain | Domain | |
| IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily | |
| IPR002793 | Endonuclease NucS | Family | |
| IPR049173 | Endonuclease NucS, N-terminal domain superfamily | Homologous Superfamily |














