2V1C | pdb_00002v1c

Crystal structure and mutational study of RecOR provide insight into its role in DNA repair


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyNucleic acid-binding proteins 8042766 3000135 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyArfGap/RecO-like zinc finger 8042768 3000151 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyToprim domain-like 8055733 3000737 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8041284 3000068 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecR N-terminal domain-like 8055731 3001909 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecR N-terminal domain-like 8055731 3001909 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyToprim domain-like 8055733 3000737 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8041284 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CDAO, NAD_binding_8e2v1cC1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF: DAO, NAD_binding_8ECOD (v294.1)
BEB1e2v1cB4 A: a/b three-layered sandwichesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: EB1ECOD (v294.1)
AEB1e2v1cA4 A: a/b three-layered sandwichesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: EB1ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02565Recombination protein O C terminal (RecO_C)Recombination protein O C terminal- Family
A, B
PF21176RecR, helix-hairpin-helix (RecR_HhH)RecR, helix-hairpin-helix- Motif
A, B
PF21175RecR, C-terminal (RecR_C)RecR, C-terminalThe bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consist ...The bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consisting of a N-terminal helix-hairpin-helix (HhH) motif, a middle region containing a zinc finger motif (Pfam:PF02132) and a Toprim domain (Pfam:PF13662), and a C-terminal domain comprising a Walker B motif and a C-terminal helix [1,2]. This is the C-terminal domain of RecR, which has a divergent Walker B motif, suggesting a nucleotide binding site [1,2].
Domain
A, B
PF02132RecR, Cys4-zinc finger domain (RecR_ZnF)RecR, Cys4-zinc finger domainThe bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consist ...The bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consisting of a N-terminal helix-hairpin-helix (HhH) motif, a middle region containing a zinc finger motif and a Toprim domain (Pfam:PF13662) and a C-terminal domain comprising a Walker B motif and a C-terminal helix [1,2]. This is the zinc finger motif, which consists of four strictly conserved cysteine residues which coordinate a zinc ion. This motif is the most conserved domain in RecR proteins and plays a structural role stabilizing the 3D structure of the protein [3].
Domain
A, B
PF01751Toprim domain (Toprim)Toprim domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HYPOTHETICAL PROTEIN
A, B
RECOMBINATION PROTEIN RECR -