2SEB | pdb_00002seb

X-RAY CRYSTAL STRUCTURE OF HLA-DR4 COMPLEXED WITH A PEPTIDE FROM HUMAN COLLAGEN II

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth D]	d2sebd1	All beta proteins	OB-fold	Bacterial enterotoxins	Superantigen toxins, N-terminal domain	Staphylococcal enterotoxin B, SEB	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C [auth D]	d2sebd2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Superantigen toxins, C-terminal domain	Superantigen toxins, C-terminal domain	Staphylococcal enterotoxin B, SEB	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d2sebb1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	Class II MHC beta chain, C-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2sebb2	Alpha and beta proteins (a+b)	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain	Class II MHC beta chain, N-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2seba1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	Class II MHC alpha chain, C-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2seba2	Alpha and beta proteins (a+b)	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain	Class II MHC alpha chain, N-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth D]	SCOP2B Superfamily	Bacterial enterotoxins	8041881	3000434	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Superantigen toxins C-terminal domain-like	8034577	3000376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MHC antigen-recognition domain	8055636	3000521	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054705	3000071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054703	3000071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MHC antigen-recognition domain	8034737	3000521	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MHC antigen-recognition domain	8040455	3000521	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054671	3000071	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	e2sebD1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: KOW, Ribosomal_L26	F:	ECOD (20:10:01)
C [auth D]	e2sebD2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
B	e2sebB1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
B	e2sebB2	A: Nat/Ivy	X: Acyl-CoA N-acyltransferases (Nat)	H: Acyl-CoA N-acyltransferases (Nat)	T: MoCoBD_2	F:	ECOD (20:10:01)
A	e2sebA1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
A	e2sebA2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Anthrax_toxA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	2.40.50.110	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C [auth D]	3.10.20.120	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (4.3.0)
B	3.10.320.10	Alpha Beta	Roll	Class II Histocompatibility Antigen, M Beta Chain	Chain B, domain 1	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	3.10.320.10	Alpha Beta	Roll	Class II Histocompatibility Antigen, M Beta Chain	Chain B, domain 1	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
C [auth D]	Superantigen enterotoxin type B (SEB)	Toxin	Staphylococcus aureus	entB*01	R-LIKE-DOMAIN SAG-DOMAIN	TOX	Protein	IMGT (202609-0)
B	MH2 HLA-DRA0101_HLA-DRB10401	II-BETA	Homo sapiens (human)	HLA-DRB1*0401	G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE	MH	MH2-ALPHA_BETA	IMGT (202609-0)
A	MH2 HLA-DRA0101_HLA-DRB10401	II-ALPHA	Homo sapiens (human)	HLA-DRA0101, HLA-DRA0102	G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE	MH	MH2-ALPHA_BETA	IMGT (202609-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
B	PF00969	Class II histocompatibility antigen, beta domain (MHC_II_beta)	Class II histocompatibility antigen, beta domain	Domain
B	PF07654	Immunoglobulin C1-set domain (C1-set)	Immunoglobulin C1-set domain	Domain
A	PF07654	Immunoglobulin C1-set domain (C1-set)	Immunoglobulin C1-set domain	Domain
A	PF00993	Class II histocompatibility antigen, alpha domain (MHC_II_alpha)	Class II histocompatibility antigen, alpha domain	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth E]	PEPTIDE FROM COLLAGEN II	protein binding binding signaling receptor binding MHC class II protein binding MHC protein binding structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength identical protein binding protein homodimerization activity protein dimerization activity platelet-derived growth factor binding growth factor binding proteoglycan binding protein binding binding signaling receptor binding MHC class II protein binding MHC protein binding structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength identical protein binding protein homodimerization activity protein dimerization activity platelet-derived growth factor binding growth factor binding proteoglycan binding carbohydrate derivative binding cation binding ion binding metal ion binding small molecule binding	developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development carbohydrate derivative metabolic process metabolic process cellular process primary metabolic process developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development carbohydrate derivative metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process proteoglycan metabolic process glycoprotein metabolic process limb development appendage development limb bud formation anatomical structure morphogenesis appendage morphogenesis anatomical structure formation involved in morphogenesis limb morphogenesis cellular response to stimulus negative regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cellular process response to stimulus signal transduction in absence of ligand negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process extrinsic apoptotic signaling pathway in absence of ligand signal transduction regulation of signaling regulation of biological process cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process biological regulation cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway central nervous system development nervous system development epithelium development otic vesicle development ear development sensory organ development tube development inner ear development embryonic skeletal joint development embryonic organ morphogenesis chordate embryonic development embryonic morphogenesis embryo development embryonic skeletal joint morphogenesis embryo development ending in birth or egg hatching embryonic skeletal system development animal organ morphogenesis skeletal system morphogenesis embryonic organ development embryonic skeletal system morphogenesis ear morphogenesis sensory organ morphogenesis inner ear morphogenesis regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process endochondral ossification replacement ossification endochondral bone morphogenesis ossification bone morphogenesis bone development cell aggregation cartilage condensation cellular component organization collagen fibril organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization heart development heart morphogenesis circulatory system development notochord development system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus sensory perception of light stimulus visual perception multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis cartilage development involved in endochondral bone morphogenesis cellular developmental process cell differentiation chondrocyte differentiation roof of mouth development anterior head development head development cellular response to BMP stimulus cellular response to endogenous stimulus response to BMP cellular response to growth factor stimulus response to endogenous stimulus response to growth factor	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure solid phase of interstitial matrix protein-containing complex fibrillar collagen complex collagen trimer fibrillar collagen trimer complex of collagen trimers collagen type XI trimer supramolecular complex collagenous component of interstitial matrix basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure solid phase of interstitial matrix protein-containing complex fibrillar collagen complex collagen trimer fibrillar collagen trimer complex of collagen trimers collagen type XI trimer supramolecular complex collagenous component of interstitial matrix interstitial matrix collagen type II trimer membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region extracellular space
C [auth D]	ENTEROTOXIN TYPE B	cation binding ion binding binding metal ion binding small molecule binding toxin activity	-	cellular anatomical structure extracellular region
B	HLA CLASS II HISTOCOMPATIBILITY ANTIGEN	binding antigen binding peptide antigen binding peptide binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding polysaccharide binding carbohydrate binding protein binding signaling receptor binding T cell receptor binding CD4 receptor binding structural constituent of cytoskeleton binding antigen binding peptide antigen binding peptide binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding polysaccharide binding carbohydrate binding protein binding signaling receptor binding T cell receptor binding CD4 receptor binding structural constituent of cytoskeleton structural molecule activity	antigen processing and presentation antigen processing and presentation of endogenous peptide antigen via MHC class II antigen processing and presentation of peptide or polysaccharide antigen via MHC class II immune system process antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class II antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization antigen processing and presentation antigen processing and presentation of endogenous peptide antigen via MHC class II antigen processing and presentation of peptide or polysaccharide antigen via MHC class II immune system process antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class II antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis biological process involved in interspecies interaction between organisms response to stimulus detection of external biotic stimulus response to other organism response to external stimulus detection of biotic stimulus detection of bacterium response to biotic stimulus detection of stimulus response to bacterium detection of other organism response to external biotic stimulus negative regulation of lymphocyte proliferation multicellular organismal process regulation of cellular process regulation of leukocyte activation negative regulation of biological process regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation regulation of biological process cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion biological regulation cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation defense response immune response response to stress inflammatory response inflammatory response to antigenic stimulus myeloid leukocyte differentiation regulation of leukocyte differentiation positive regulation of monocyte differentiation cellular developmental process regulation of developmental process positive regulation of biological process cell development regulation of cell differentiation mononuclear cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell differentiation positive regulation of hemopoiesis cell differentiation anatomical structure development monocyte differentiation positive regulation of immune system process positive regulation of cellular process developmental process regulation of multicellular organismal development regulation of monocyte differentiation hemopoiesis regulation of myeloid cell differentiation positive regulation of cell development regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of multicellular organismal process positive regulation of leukocyte differentiation leukocyte differentiation regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response regulation of response to stress negative regulation of inflammatory response to antigenic stimulus negative regulation of response to stimulus negative regulation of immune response regulation of inflammatory response to antigenic stimulus regulation of inflammatory response regulation of response to stimulus negative regulation of response to external stimulus negative regulation of defense response regulation of immune response regulation of type II interferon production type II interferon production cytokine production regulation of cytokine production negative regulation of type II interferon production negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process regulation of interleukin-4 production interleukin-4 production adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity positive regulation of leukocyte mediated immunity positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of immune response positive regulation of leukocyte mediated cytotoxicity leukocyte mediated immunity positive regulation of immune effector process positive regulation of adaptive immune response regulation of T cell mediated immunity T cell mediated cytotoxicity positive regulation of T cell mediated cytotoxicity regulation of adaptive immune response regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity adaptive immune response immune effector process regulation of leukocyte mediated immunity regulation of T cell mediated cytotoxicity regulation of lymphocyte mediated immunity positive regulation of T cell mediated immunity regulation of cell killing positive regulation of cell killing cell killing regulation of alpha-beta T cell activation lymphocyte differentiation positive regulation of T cell differentiation positive regulation of cell activation positive regulation of leukocyte activation alpha-beta T cell activation T cell differentiation positive regulation of T cell activation positive regulation of CD4-positive, alpha-beta T cell differentiation positive regulation of regulatory T cell differentiation positive regulation of alpha-beta T cell activation regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation positive regulation of alpha-beta T cell differentiation positive regulation of leukocyte cell-cell adhesion regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation CD4-positive, alpha-beta T cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation positive regulation of CD4-positive, alpha-beta T cell activation alpha-beta T cell differentiation CD4-positive, alpha-beta T cell activation regulation of lymphocyte differentiation positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation positive regulation of cell adhesion regulation of regulatory T cell differentiation CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulation of CD4-positive, alpha-beta T cell activation regulatory T cell differentiation positive regulation of lymphocyte differentiation cellular response to stimulus immune response-regulating cell surface receptor signaling pathway signaling cell communication immune response-activating signaling pathway immune response-regulating signaling pathway signal transduction cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway T cell receptor signaling pathway antigen receptor-mediated signaling pathway activation of immune response humoral immune response epidermis development tissue development antigen processing and presentation of exogenous peptide antigen via MHC class II antigen processing and presentation of exogenous peptide antigen antigen processing and presentation of exogenous antigen interleukin-10 production regulation of interleukin-10 production peptide antigen assembly with MHC class II protein complex peptide antigen assembly with MHC protein complex MHC class II protein complex assembly MHC protein complex assembly positive regulation of cell communication regulation of localization establishment of protein localization nitrogen compound transport positive regulation of establishment of protein localization localization carbohydrate homeostasis establishment of localization in cell positive regulation of insulin secretion involved in cellular response to glucose stimulus positive regulation of insulin secretion intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose response to chemical glucose homeostasis positive regulation of protein localization insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport homeostatic process positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion regulation of secretion by cell secretion by cell positive regulation of hormone secretion response to monosaccharide response to carbohydrate positive regulation of secretion signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus positive regulation of peptide secretion regulation of signaling regulation of transport secretion regulation of peptide transport regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport positive regulation of protein secretion peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis positive regulation of transport regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication insulin secretion positive regulation of signaling macrophage differentiation regulation of response to biotic stimulus positive regulation of response to biotic stimulus immune response to tumor cell regulation of response to tumor cell T cell mediated immune response to tumor cell regulation of T cell mediated immune response to tumor cell response to tumor cell positive regulation of immune response to tumor cell regulation of immune response to tumor cell positive regulation of T cell mediated immune response to tumor cell positive regulation of response to tumor cell T-helper 1 type immune response dendritic cell antigen processing and presentation myeloid dendritic cell antigen processing and presentation regulation of T-helper cell differentiation T-helper cell differentiation immunological memory formation process cell activation involved in immune response positive regulation of memory T cell differentiation memory T cell differentiation T cell activation involved in immune response leukocyte activation involved in immune response lymphocyte activation involved in immune response T cell differentiation involved in immune response regulation of memory T cell differentiation immunological memory process	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle endosome membrane endosome late endosome membrane endomembrane system late endosome vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome Golgi membrane Golgi apparatus transport vesicle transport vesicle membrane polymeric cytoskeletal fiber intracellular membraneless organelle intermediate filament cytoskeleton cytoskeleton membraneless organelle intermediate filament supramolecular fiber supramolecular polymer supramolecular complex MHC protein complex MHC class II protein complex protein-containing complex plasma membrane protein complex membrane protein complex organelle subcompartment lumenal side of endoplasmic reticulum membrane lumenal side of membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane immunological synapse autolysosome autolysosome membrane secondary lysosome Golgi apparatus subcompartment trans-Golgi network membrane trans-Golgi network COPII-coated ER to Golgi transport vesicle ER to Golgi transport vesicle membrane
A	HLA CLASS II HISTOCOMPATIBILITY ANTIGEN	binding antigen binding peptide antigen binding peptide binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding polysaccharide binding carbohydrate binding protein binding signaling receptor binding T cell receptor binding	multicellular organismal process regulation of cellular process regulation of alpha-beta T cell activation regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of CD4-positive, alpha-beta T cell activation positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion multicellular organismal process regulation of cellular process regulation of alpha-beta T cell activation regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of CD4-positive, alpha-beta T cell activation positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation CD4-positive, alpha-beta T cell activation positive regulation of leukocyte activation alpha-beta T cell activation regulation of immune system process regulation of multicellular organismal process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of cellular process regulation of biological process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation biological regulation regulation of T cell activation positive regulation of alpha-beta T cell activation regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process cellular process regulation of lymphocyte activation response to stimulus immune response positive regulation of response to stimulus positive regulation of immune response regulation of response to stimulus regulation of immune response antigen processing and presentation antigen processing and presentation of peptide or polysaccharide antigen via MHC class II antigen processing and presentation of endogenous peptide antigen via MHC class II antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class II antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen adaptive immune response antigen processing and presentation of exogenous peptide antigen via MHC class II antigen processing and presentation of exogenous peptide antigen antigen processing and presentation of exogenous antigen system process nervous system process cognition peptide antigen assembly with MHC class II protein complex protein-containing complex organization peptide antigen assembly with MHC protein complex MHC class II protein complex assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly MHC protein complex assembly cellular component organization or biogenesis dendritic cell antigen processing and presentation myeloid dendritic cell antigen processing and presentation adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity positive regulation of leukocyte mediated immunity positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of leukocyte mediated cytotoxicity leukocyte mediated immunity positive regulation of immune effector process positive regulation of adaptive immune response regulation of T cell mediated immunity T cell mediated cytotoxicity positive regulation of T cell mediated cytotoxicity regulation of adaptive immune response regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of T cell mediated cytotoxicity regulation of lymphocyte mediated immunity positive regulation of T cell mediated immunity regulation of cell killing positive regulation of cell killing cell killing regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation regulation of cell development multicellular organism development cell differentiation regulation of T-helper cell differentiation anatomical structure development T cell differentiation developmental process T-helper cell differentiation leukocyte differentiation cellular developmental process regulation of developmental process cell development regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation CD4-positive, alpha-beta T cell differentiation regulation of T cell differentiation alpha-beta T cell differentiation regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis regulation of hemopoiesis immunological memory formation process cell activation involved in immune response positive regulation of T cell differentiation positive regulation of developmental process positive regulation of memory T cell differentiation positive regulation of cell development memory T cell differentiation T cell activation involved in immune response positive regulation of hemopoiesis positive regulation of cell differentiation leukocyte activation involved in immune response lymphocyte activation involved in immune response T cell differentiation involved in immune response regulation of memory T cell differentiation immunological memory process positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation positive regulation of CD4-positive, alpha-beta T cell differentiation positive regulation of regulatory T cell differentiation regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation positive regulation of alpha-beta T cell differentiation positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulation of regulatory T cell differentiation CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulatory T cell differentiation	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle cellular anatomical structure bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle cellular anatomical structure bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cell surface MHC protein complex cell periphery MHC class II protein complex protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex endosome membrane endosome late endosome membrane endomembrane system late endosome lytic vacuole vacuole lysosome organelle subcompartment lumenal side of endoplasmic reticulum membrane side of membrane lumenal side of membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane immunological synapse vacuolar membrane lytic vacuole membrane lysosomal membrane Golgi membrane Golgi apparatus early endosome early endosome membrane autolysosome autolysosome membrane secondary lysosome Golgi apparatus subcompartment trans-Golgi network membrane trans-Golgi network transport vesicle transport vesicle membrane COPII-coated ER to Golgi transport vesicle ER to Golgi transport vesicle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth E]	IPR008160	Collagen triple helix repeat	Repeat
D [auth E]	IPR000885	Fibrillar collagen, C-terminal	Domain
D [auth E]	IPR001007	VWFC domain	Domain
D [auth E]	IPR050149	Collagen superfamily	Family
C [auth D]	IPR006123	Staphylococcal/Streptococcal toxin, beta-grasp domain	Domain
C [auth D]	IPR006177	Staphylococcal/streptococcal toxin, bacterial	Family
C [auth D]	IPR006126	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site	Conserved Site
C [auth D]	IPR016091	Superantigen toxin, C-terminal	Homologous Superfamily
C [auth D]	IPR006173	Staphylococcal/Streptococcal toxin, OB-fold	Domain
C [auth D]	IPR013307	Superantigen, staphylococcal/streptococcal toxin, bacterial	Family
C [auth D]	IPR008992	Enterotoxin	Homologous Superfamily
B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
B	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
B	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR007110	Immunoglobulin-like domain	Domain
B	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
B	IPR003597	Immunoglobulin C1-set	Domain
B	IPR000353	MHC class II, beta chain, N-terminal	Domain
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
A	IPR003597	Immunoglobulin C1-set	Domain
A	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
A	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
A	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR001003	MHC class II, alpha chain, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D [auth E]	Pharos: P02458	Kniest dysplasia spondyloepiphyseal dysplasia congenita platyspondylic dysplasia, Torrance type Legg-Calve-Perthes disease mild spondyloepiphyseal dysplasia due to COL2A1 mutation with early-onset osteoarthritis spondyloepimetaphyseal dysplasia, Strudwick type spondyloperipheral dysplasia-short ulna syndrome osteochondrodysplasia chondrosarcoma Czech dysplasia, metatarsal type Stickler syndrome, type I, nonsyndromic ocular synovitis cleft palate multiple epiphyseal dysplasia, Beighton type Stickler syndrome type 1 Kniest dysplasia spondyloepiphyseal dysplasia congenita platyspondylic dysplasia, Torrance type Legg-Calve-Perthes disease mild spondyloepiphyseal dysplasia due to COL2A1 mutation with early-onset osteoarthritis spondyloepimetaphyseal dysplasia, Strudwick type spondyloperipheral dysplasia-short ulna syndrome osteochondrodysplasia chondrosarcoma Czech dysplasia, metatarsal type Stickler syndrome, type I, nonsyndromic ocular synovitis cleft palate multiple epiphyseal dysplasia, Beighton type Stickler syndrome type 1 melanoma spondyloepiphyseal dysplasia, Stanescu type osteoarthritis Arthritis, Experimental Stickler syndrome achondrogenesis type II cataract achondrogenesis hypochondrogenesis retinal detachment chondromalacia myopia otospondylomegaepiphyseal dysplasia arthritic joint disease Wagner disease cartilage disease spondyloepiphyseal dysplasia multiple epiphyseal dysplasia dysspondyloenchondromatosis hyperplasia avascular necrosis of femoral head, primary, 1 rheumatoid arthritis megaepiphyseal dwarfism Osgood-Schlatter disease osteogenesis imperfecta gastric carcinoma otospondylomegaepiphyseal dysplasia, autosomal recessive pituitary cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor avascular necrosis of femoral head, primary, 2 Schwartz-Jampel syndrome bone resorption disease malignant glioma spondyloepiphyseal dysplasia tarda, X-linked mucopolysaccharidosis type 4 cutaneous melanoma spondylometaphyseal dysplasia, Kozlowski type Ehlers-Danlos syndrome familial avascular necrosis of femoral head glioblastoma prostate carcinoma autosomal dominant rhegmatogenous retinal detachment X-linked mixed deafness with perilymphatic gusher large cell medulloblastoma lung cancer medulloblastoma Melnick-Needles syndrome spondyloepiphyseal dysplasia with congenital joint dislocations spondylometaphyseal dysplasia, 'corner fracture' type spondylometaphyseal dysplasia, Schmidt type osteoarthritis susceptibility 1 osteochondrosis otospondylomegaepiphyseal dysplasia, autosomal dominant pilocytic astrocytoma intellectual disability malignant ependymoma
B	Pharos: P01911	Crohn disease narcolepsy rheumatoid arthritis sarcoidosis ulcerative colitis juvenile idiopathic arthritis nephrotic syndrome membranous glomerulonephritis psoriatic arthritis Hashimoto thyroiditis asthma pancreatitis follicular lymphoma chronic beryllium disease multiple sclerosis Crohn disease narcolepsy rheumatoid arthritis sarcoidosis ulcerative colitis juvenile idiopathic arthritis nephrotic syndrome membranous glomerulonephritis psoriatic arthritis Hashimoto thyroiditis asthma pancreatitis follicular lymphoma chronic beryllium disease multiple sclerosis angioedema type 1 diabetes mellitus oropharynx cancer eosinophilia-myalgia syndrome systemic lupus erythematosus typhoid fever visceral leishmaniasis alopecia areata lung carcinoma allergic disease urticaria limited scleroderma proteinuria Graves disease schizophrenia narcolepsy-cataplexy syndrome drug allergy bullous pemphigoid Familial Ménière disease cerebrovascular disorder reticulum cell sarcoma hepatitis B virus infection metabolic syndrome X colorectal adenoma sinusitis multiple sclerosis, susceptibility to 1 squamous cell carcinoma acquired metabolic disease hypothyroidism nasal cavity disease diabetes mellitus temporal arteritis IgA glomerulonephritis neoplasm of oropharynx autism spectrum disorder nodular sclerosis classical Hodgkin lymphoma diffuse scleroderma vitiligo B-cell chronic lymphocytic leukemia oral cavity cancer bipolar disorder endogenous depression eosinophilic granulomatosis with polyangiitis lymphoma C1 inhibitor deficiency primary biliary cholangitis cervical cancer head and neck cancer lymphosarcoma hepatitis C virus infection colorectal cancer sarcoidosis, susceptibility to, 1 Sjogren syndrome hepatocellular carcinoma myasthenia gravis Crohn's colitis squamous cell lung carcinoma Hodgkins lymphoma narcolepsy without cataplexy cutaneous lupus erythematosus systemic sclerosis idiopathic membranous glomerulonephritis nasopharyngeal disease ileocolitis atopic eczema diffuse cutaneous systemic sclerosis non-alcoholic fatty liver disease pemphigus vulgaris esophageal adenocarcinoma celiac disease head and neck squamous cell carcinoma chronic obstructive pulmonary disease rosacea CREST syndrome skin basal cell carcinoma myositis allergic rhinitis demyelinating disease Takayasu arteritis idiopathic pulmonary fibrosis arthritic joint disease neoplasm of mature B-cells inflammatory bowel disease autism neuromyelitis optica leprosy autoimmune disease non-Hodgkin lymphoma osteoporosis drug-induced liver injury Lyme disease peripheral arterial disease
A	Pharos: P01903	toxic shock syndrome lung carcinoma multiple sclerosis juvenile dermatomyositis systemic sclerosis ulcerative colitis Parkinson disease Sjogren syndrome Crohn disease Graham Little Piccardi Lassueur syndrome pancreatic ductal adenocarcinoma Hashimoto thyroiditis pilocytic astrocytoma psoriatic arthritis Hodgkins lymphoma toxic shock syndrome lung carcinoma multiple sclerosis juvenile dermatomyositis systemic sclerosis ulcerative colitis Parkinson disease Sjogren syndrome Crohn disease Graham Little Piccardi Lassueur syndrome pancreatic ductal adenocarcinoma Hashimoto thyroiditis pilocytic astrocytoma psoriatic arthritis Hodgkins lymphoma skin basal cell carcinoma invasive ductal breast carcinoma systemic lupus erythematosus adrenal cortex carcinoma limb-girdle muscular dystrophy astrocytic tumor Becker muscular dystrophy malignant glioma celiac disease dermatomyositis neoplasm of mature B-cells Down syndrome non-alcoholic fatty liver disease esophageal adenocarcinoma osteoporosis Graham Little-Piccardi-Lassueur syndrome pancreatic intraductal papillary-mucinous carcinoma head and neck cancer primary biliary cholangitis IgA glomerulonephritis squamous cell lung carcinoma lung adenocarcinoma atopic eczema lymphoplasmacytic lymphoma breast cancer marginal zone lymphoma chronic obstructive pulmonary disease diabetes mellitus nephrotic syndrome Duchenne muscular dystrophy non-small cell lung carcinoma glioblastoma ovarian cancer Graves disease heart disease prostate carcinoma interstitial cystitis subependymal giant cell astrocytoma juvenile idiopathic arthritis temporal arteritis alopecia areata lung cancer vitiligo autism spectrum disorder malignant ependymoma breast carcinoma membranous glomerulonephritis myasthenia gravis diffuse scleroderma nodular sclerosis classical Hodgkin lymphoma osteoarthritis