2RGO

Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	GlpD C-terminal domain-like	8046311	4005013	SCOP2 (2022-06-29)
A	SCOP2 Family	D-aminoacid oxidase-like	8091743	4000124	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bfd-like	8091742	3002540	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Flavoreductase-like	8091744	3000055	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Bfd-like	8091742	3002540	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flavoreductase-like	8091744	3000055	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DAO_C	e2rgoA3	A: alpha arrays	X: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	H: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	T: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase	F: DAO_C	ECOD (1.6)
A	DAO_2nd_2	e2rgoA2	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: DAO_2nd_2	ECOD (1.6)
A	FAD_binding_3_1st	e2rgoA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: FAD_binding_3_1st	ECOD (1.6)
B	DAO_C	e2rgoB2	A: alpha arrays	X: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	H: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	T: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase	F: DAO_C	ECOD (1.6)
B	DAO_2nd_2	e2rgoB3	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: DAO_2nd_2	ECOD (1.6)
B	FAD_binding_3_1st	e2rgoB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: FAD_binding_3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
A	3.30.9.10	Alpha Beta	2-Layer Sandwich	D-Amino Acid Oxidase	Chain A, domain 2	CATH (4.3.0)
A	1.10.8.870	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
B	3.30.9.10	Alpha Beta	2-Layer Sandwich	D-Amino Acid Oxidase	Chain A, domain 2	CATH (4.3.0)
B	1.10.8.870	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01266	FAD dependent oxidoreductase (DAO)	FAD dependent oxidoreductase	This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	Domain
A, B	PF16901	C-terminal domain of alpha-glycerophosphate oxidase (DAO_C)	C-terminal domain of alpha-glycerophosphate oxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Alpha-Glycerophosphate Oxidase	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors glycerol-3-phosphate oxidase activity catalytic activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding glycerol-3-phosphate dehydrogenase (quinone) activity oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	carbohydrate metabolic process polyol metabolic process alditol metabolic process organic hydroxy compound metabolic process primary metabolic process metabolic process alcohol metabolic process small molecule metabolic process glycerol metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process cellular metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process carbohydrate metabolic process polyol metabolic process alditol metabolic process organic hydroxy compound metabolic process primary metabolic process metabolic process alcohol metabolic process small molecule metabolic process glycerol metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process cellular metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process cellular process alditol phosphate metabolic process phosphorus metabolic process	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000447	FAD-dependent glycerol-3-phosphate dehydrogenase	Family
A, B	IPR031656	Alpha-glycerophosphate oxidase, C-terminal	Domain
A, B	IPR038299	Alpha-glycerophosphate oxidase, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR006076	FAD dependent oxidoreductase	Domain
A, B	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.