2RD9 | pdb_00002rd9

Crystal structure of a putative yfit-like metal-dependent hydrolase (bh0186) from bacillus halodurans c-125 at 2.30 A resolution

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADEPe2rd9A1 A: a/b three-layered sandwichesX: Profilin-likeH: sensor domainsT: sensor domainsF: DEPECOD (v294.1)
Be2rd9B1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF:ECOD (v294.1)
Ce2rd9C1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF:ECOD (v294.1)
De2rd9D1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.120.450 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) dinb family like domainCATH (4.3.0)
B1.20.120.450 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) dinb family like domainCATH (4.3.0)
C1.20.120.450 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) dinb family like domainCATH (4.3.0)
D1.20.120.450 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) dinb family like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF12867DinB superfamily (DinB_2)DinB superfamilyThe DinB family are an uncharacterised family of potential enzymes. The structure of these proteins is composed of a four helix bundle [1]. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR024775Hercynine oxygenase, DinB-like domainDomain
A, B, C, D
IPR034660DinB/YfiT-like putative metalloenzymesHomologous Superfamily