2RAD | pdb_00002rad

Crystal structure of the succinoglycan biosynthesis protein. Northeast structural Genomics Consortium target BcR135

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2radb_	Alpha and beta proteins (a/b)	EreA/ChaN-like	EreA/ChaN-like	EreA-like	Succinoglycan biosynthesis protein BC3120	(Bacillus cereus ATCC 14579 ) [TaxId: 226900 ],	SCOPe (2.08)
A	d2rada1	Alpha and beta proteins (a/b)	EreA/ChaN-like	EreA/ChaN-like	EreA-like	Succinoglycan biosynthesis protein BC3120	(Bacillus cereus ATCC 14579 ) [TaxId: 226900 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	EreA/ChaN-like	8038810	3000873	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EreA/ChaN-like	8038810	3000873	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Usp	e2radB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Usp	ECOD (v294.1)
A	Usp	e2radA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Usp	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1660.10	Alpha Beta	3-Layer(aba) Sandwich	EreA/ChaN-like fold	EreA-like (biosynthetic domain)	CATH (4.3.0)
B	3.30.1870.10	Alpha Beta	2-Layer Sandwich	EreA/ChaN-like, small alpha-beta sandwich	EreA-like	CATH (4.3.0)
B	1.20.1440.30	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	Biosynthetic Protein domain	CATH (4.3.0)
A	3.40.1660.10	Alpha Beta	3-Layer(aba) Sandwich	EreA/ChaN-like fold	EreA-like (biosynthetic domain)	CATH (4.3.0)
A	3.30.1870.10	Alpha Beta	2-Layer Sandwich	EreA/ChaN-like, small alpha-beta sandwich	EreA-like	CATH (4.3.0)
A	1.20.1440.30	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	Biosynthetic Protein domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05139	Erythromycin esterase (Erythro_esteras)	Erythromycin esterase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Succinoglycan biosynthesis protein	cation binding ion binding binding metal ion binding small molecule binding	response to stimulus response to chemical response to antibiotic	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR052036	Hydrolase/Phosphoribosyltransferase-associated	Family
A, B	IPR007815	Erythromycin esterase	Family
A, B	IPR014622	Uncharacterised conserved protein UCP036794, erythromycin esterase-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.