2R9Q | pdb_00002r9q

Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Piwi	e2r9qD5	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Piwi	ECOD (develop294)
C	Piwi	e2r9qC5	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Piwi	ECOD (develop294)
B	Piwi	e2r9qB3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Piwi	ECOD (develop294)
A	DCD_N	e2r9qA3	A: alpha bundles	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: DCD_N	ECOD (develop294)
A	OST_P1	e2r9qA4	A: alpha bundles	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: OST_P1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
C	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
B	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
A	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD) N-terminal domain (DCD_N)	2'-deoxycytidine 5'-triphosphate deaminase (DCD) N-terminal domain	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the N-terminal catalytic domain, which contains the active site ...	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the N-terminal catalytic domain, which contains the active site residues Arg115 and Glu138, important for its activity [1].	Domain
A, B, C, D	PF22569	2'-deoxycytidine 5'-triphosphate deaminase (DCD), C-terminal domain (DCD_C)	2'-deoxycytidine 5'-triphosphate deaminase (DCD), C-terminal domain	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the C-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth Y]	Synthetic peptide 2	-	-	-
E [auth X]	Synthetic peptide 1	-	-	-
A, B, C, D	2'-deoxycytidine 5'-triphosphate deaminase	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines hydrolase activity dCTP deaminase activity catalytic activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	nucleoside phosphate metabolic process 2'-deoxyribonucleotide metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process nucleobase-containing compound metabolic process deoxyribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR053811	2'-deoxycytidine 5'-triphosphate deaminase, C-terminal domain	Domain
A, B, C, D	IPR033704	dUTPase, trimeric	Domain
A, B, C, D	IPR036157	dUTPase-like superfamily	Homologous Superfamily
A, B, C, D	IPR010550	2'-deoxycytidine 5'-triphosphate deaminase, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.