Crystal Structure of Rotavirus SA11 VP1/RNA (UGUGAACC) Complex
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth A] | e2r7tA1 | A: HTH | X: HTH | H: tetra-helical, lambda repressor-like | T: Lipocalin | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth A] | 1.20.120.1390 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
| B [auth A] | 1.10.10.1990 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Viral RNA-directed RNA polymerase, 4-helical domain | CATH (4.3.0) |
| B [auth A] | 3.30.70.2480 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
| B [auth A] | 1.10.357.80 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
| B [auth A] | 3.30.230.140 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
| B [auth A] | 1.20.120.1400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| B [auth A] | IPR001795 | RNA-directed RNA polymerase, luteovirus | Family |
| B [auth A] | IPR007097 | RNA-directed RNA polymerase, reovirus | Domain |
| B [auth A] | IPR042032 | Viral RNA-directed RNA polymerase, 4-helical domain | Homologous Superfamily |
| B [auth A] | IPR022071 | Rotavirus VP1 RNA-directed RNA polymerase, C-terminal | Domain |
| B [auth A] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |














