2QGV | pdb_00002qgv

Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d2qgvj_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
I	d2qgvi_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
H	d2qgvh_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
G	d2qgvg_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
F	d2qgvf_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
E	d2qgve_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
D	d2qgvd_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
C	d2qgvc_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
B	d2qgvb_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
A	d2qgva_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
A	SCOP2 Family	HyaE-like	8078288	4002936	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8078289	3000031	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	HyaE	e2qgvJ1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
I	HyaE	e2qgvI1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
H	HyaE	e2qgvH1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
G	HyaE	e2qgvG1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
F	HyaE	e2qgvF1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
E	HyaE	e2qgvE1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
D	HyaE	e2qgvD1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
C	HyaE	e2qgvC1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
B	HyaE	e2qgvB1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)
A	HyaE	e2qgvA1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: HyaE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
I	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF07449	Hydrogenase-1 expression protein HyaE (HyaE)	Hydrogenase-1 expression protein HyaE	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR010893	[NiFe]-hydrogenase maturation factor HyaE	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.