2QGV | pdb_00002qgv

Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d2qgvj_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
I	d2qgvi_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
H	d2qgvh_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
G	d2qgvg_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
F	d2qgvf_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
E	d2qgve_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
D	d2qgvd_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
C	d2qgvc_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
B	d2qgvb_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)
A	d2qgva_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	HyaE-like	automated matches	(Shigella flexneri 2a str. 301 ) [TaxId: 198214 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8078289	3000031	SCOP2B (2022-06-29)
A	SCOP2 Family	HyaE-like	8078288	4002936	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8078289	3000031	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	DAO, NAD_binding_8	e2qgvJ1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
I	DAO, NAD_binding_8	e2qgvI1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
H	DAO, NAD_binding_8	e2qgvH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
G	DAO, NAD_binding_8	e2qgvG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
F	DAO, NAD_binding_8	e2qgvF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
E	DAO, NAD_binding_8	e2qgvE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
D	DAO, NAD_binding_8	e2qgvD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
C	DAO, NAD_binding_8	e2qgvC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
B	DAO, NAD_binding_8	e2qgvB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
A	DAO, NAD_binding_8	e2qgvA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
I	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF07449	Hydrogenase-1 expression protein HyaE (HyaE)	Hydrogenase-1 expression protein HyaE	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR010893	[NiFe]-hydrogenase maturation factor HyaE	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.