2QDN | pdb_00002qdn

Crystal Structure of mouse GITRL

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2qdnb_	All beta proteins	TNF-like	TNF-like	TNF-like	Glucocorticoid-induced TNF-related ligand, TNFSF18	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2qdna1	All beta proteins	TNF-like	TNF-like	TNF-like	Glucocorticoid-induced TNF-related ligand, TNFSF18	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	TNF-like	8003759	3000061	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TNF-like	8003759	3000061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TPK_B1_binding	e2qdnB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TPK_B1_binding	ECOD (v294.1)
A	TPK_B1_binding	e2qdnA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TPK_B1_binding	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	GITR ligand	molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity protein binding binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding identical protein binding	cellular response to stimulus positive regulation of locomotion regulation of cell motility regulation of cellular process response to stimulus macrophage migration positive regulation of chemotaxis positive regulation of cell migration taxis cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process chemotaxis cellular response to stimulus positive regulation of locomotion regulation of cell motility regulation of cellular process response to stimulus macrophage migration positive regulation of chemotaxis positive regulation of cell migration taxis cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process chemotaxis regulation of biological process regulation of leukocyte chemotaxis regulation of leukocyte migration positive regulation of macrophage migration response to external stimulus positive regulation of leukocyte chemotaxis granulocyte migration leukocyte migration regulation of response to stimulus response to chemical regulation of locomotion regulation of response to external stimulus macrophage chemotaxis positive regulation of biological process positive regulation of response to stimulus regulation of granulocyte chemotaxis regulation of macrophage migration positive regulation of response to external stimulus positive regulation of cell motility regulation of cell migration myeloid leukocyte migration positive regulation of mononuclear cell migration cell motility locomotion positive regulation of cellular process cell chemotaxis regulation of macrophage chemotaxis biological regulation positive regulation of leukocyte migration regulation of chemotaxis cellular response to chemical stimulus immune system process granulocyte chemotaxis mononuclear cell migration positive regulation of macrophage chemotaxis cellular process leukocyte chemotaxis regulation of cellular component organization protein-containing complex organization regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis cell adhesion positive regulation of cell adhesion regulation of cell adhesion dendritic cell chemotaxis regulation of dendritic cell chemotaxis dendritic cell migration immune response adaptive immune response regulation of defense response defense response regulation of inflammatory response positive regulation of inflammatory response regulation of response to stress response to stress positive regulation of defense response inflammatory response multicellular organismal process regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte proliferation leukocyte activation T cell activation lymphocyte proliferation regulation of multicellular organismal process T cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation cell activation regulation of T cell activation regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation positive regulation of monocyte chemotaxis regulation of monocyte chemotaxis monocyte chemotaxis cell surface receptor signaling pathway signaling response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of alpha-beta T cell activation regulation of cell development negative regulation of cell adhesion negative regulation of cell fate commitment multicellular organism development negative regulation of T cell differentiation cell differentiation regulation of T-helper cell differentiation alpha-beta T cell activation T-helper cell differentiation alpha-beta T cell lineage commitment negative regulation of leukocyte differentiation negative regulation of immune effector process immune effector process negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains negative regulation of T-helper 17 cell lineage commitment negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process T-helper 17 cell differentiation cell fate commitment CD4-positive or CD8-positive, alpha-beta T cell lineage commitment regulation of developmental process cell development negative regulation of T-helper 17 cell differentiation CD4-positive, alpha-beta T cell differentiation regulation of T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response leukocyte activation involved in immune response negative regulation of cell differentiation regulation of cell-cell adhesion regulation of T-helper 17 cell differentiation hemopoiesis negative regulation of developmental process negative regulation of T-helper 17 type immune response negative regulation of cell development regulation of CD4-positive, alpha-beta T cell activation negative regulation of alpha-beta T cell activation regulation of immune effector process regulation of leukocyte differentiation negative regulation of biological process mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response anatomical structure development T cell differentiation CD4-positive, alpha-beta T cell lineage commitment negative regulation of hemopoiesis developmental process regulation of adaptive immune response negative regulation of immune response T-helper cell lineage commitment negative regulation of adaptive immune response T-helper 17 cell lineage commitment negative regulation of CD4-positive, alpha-beta T cell activation negative regulation of lymphocyte differentiation regulation of immune response negative regulation of CD4-positive, alpha-beta T cell differentiation negative regulation of leukocyte activation leukocyte differentiation cellular developmental process regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation negative regulation of alpha-beta T cell differentiation negative regulation of lymphocyte activation leukocyte cell-cell adhesion regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains cell-cell adhesion alpha-beta T cell activation involved in immune response CD4-positive, alpha-beta T cell activation negative regulation of cellular process lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development regulation of T-helper 17 cell lineage commitment regulation of T-helper 17 type immune response negative regulation of response to stimulus regulation of cell fate commitment T cell differentiation involved in immune response T cell lineage commitment negative regulation of T-helper cell differentiation negative regulation of cell activation negative regulation of immune system process positive T cell selection regulation of hemopoiesis T cell selection T-helper 17 type immune response T cell proliferation involved in immune response	cell surface cellular anatomical structure cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B	IPR042380	Tumor necrosis factor ligand superfamily member 18	Family
A, B	IPR006052	Tumour necrosis factor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.