2QDD | pdb_00002qdd

Crystal structure of a member of enolase superfamily from Roseovarius nubinhibens ISM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2qddb2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2qddb1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2qddb4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
B	d2qddb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2qdda2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2qdda1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2qdda4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)
A	d2qdda3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Roseovarius nubinhibens ISM ) [TaxId: 89187 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DAO, NAD_binding_8	e2qddB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DAO, NAD_binding_8	ECOD (v294.1)
A	Citrate_synt	e2qddA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Citrate_synt	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	SCOP reports fold similarity with enolase N-terminal domain.	Domain
A, B	PF13378	Enolase C-terminal domain-like (MR_MLE_C)	Enolase C-terminal domain-like	This domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Mandelate racemase/muconate lactonizing enzyme	catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR034593	D-galactonate dehydratase DgoD-like	Family
A, B	IPR029065	Enolase_C-like	Unknown
A, B	IPR013342	Mandelate racemase, C-terminal domain	Domain
A, B	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A, B	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR013341	Mandelate racemase, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.