2PRR | pdb_00002prr

Crystal structure of alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein (YP_296737.1) from Ralstonia eutropha JMP134 at 2.15 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2prra1	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
B	d2prrb_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
C	d2prrc_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
D	d2prrd_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
E	d2prre_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
G	d2prrg_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
H	d2prrh_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
J	d2prrj_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
K	d2prrk_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
L	d2prrl_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
I	d2prri_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)
F	d2prrf_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	Uncharacterized protein Reut_A2532	(Cupriavidus pinatubonensis JMP134 ) [TaxId: 264198 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Atu0492-like	8023618	4001608	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	AhpD-like	8035998	3001907	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	AhpD-like	8035998	3001907	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CMD	e2prrA1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
B	CMD	e2prrB1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
C	CMD	e2prrC1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
D	CMD	e2prrD1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
E	CMD	e2prrE1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
G	CMD	e2prrG1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
H	CMD	e2prrH1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
J	CMD	e2prrJ1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
K	CMD	e2prrK1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
L	CMD	e2prrL1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
I	CMD	e2prrI1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)
F	CMD	e2prrF1	A: alpha arrays	X: AhpD-like (From Topology)	H: AhpD-like (From Topology)	T: AhpD-like	F: CMD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
A	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
B	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
B	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
C	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
C	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
D	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
D	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
E	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
E	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
G	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
G	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
H	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
H	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
J	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
J	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
K	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
K	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
L	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
L	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
I	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
I	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
F	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
F	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02627	Carboxymuconolactone decarboxylase family (CMD)	Carboxymuconolactone decarboxylase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein	peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity peroxiredoxin activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010195	Uncharacterised peroxidase-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003779	Carboxymuconolactone decarboxylase-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029032	AhpD-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004675	Alkylhydroperoxidase AhpD core	Domain