2POF | pdb_00002pof

Crystal structure of CDP-diacylglycerol pyrophosphatase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2pofb_	Alpha and beta proteins (a+b)	HIT-like	HIT-like	CDH-like	CDP-diacylglycerol pyrophosphatase CDH	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
A	d2pofa1	Alpha and beta proteins (a+b)	HIT-like	HIT-like	CDH-like	CDP-diacylglycerol pyrophosphatase CDH	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	HIT-like	8035893	3000223	SCOP2B (2022-06-29)
A	SCOP2 Family	CDH-like	8023513	4002592	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HIT-like	8035893	3000223	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Amidase_2	e2pofB1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Amidase_2	ECOD (v294.1)
A	CDH	e2pofA1	A: a/b three-layered sandwiches	X: Flagellar hook protein flgE D2 domain-like	H: Flagellar hook protein flgE D2 domain	T: Flagellar hook protein flgE D2 domain	F: CDH	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.428.30	Alpha Beta	2-Layer Sandwich	HIT family, subunit A	HIT family - CDH-like	CATH (4.3.0)
A	3.30.428.30	Alpha Beta	2-Layer Sandwich	HIT family, subunit A	HIT family - CDH-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02611	CDP-diacylglycerol pyrophosphatase (CDH)	CDP-diacylglycerol pyrophosphatase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CDP-diacylglycerol pyrophosphatase	pyrophosphatase activity CDP-diacylglycerol diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	lipid catabolic process catabolic process CDP-diacylglycerol metabolic process phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process CDP-diacylglycerol catabolic process phosphate-containing compound metabolic process glycerophospholipid catabolic process metabolic process lipid catabolic process catabolic process CDP-diacylglycerol metabolic process phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process CDP-diacylglycerol catabolic process phosphate-containing compound metabolic process glycerophospholipid catabolic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process lipid biosynthetic process phospholipid biosynthetic process biosynthetic process organophosphate biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015993	CDP-diacylglycerol pyrophosphatase, proteobacterial	Family
A, B	IPR036265	HIT-like superfamily	Homologous Superfamily
A, B	IPR003763	CDP-diacylglycerol pyrophosphatase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.