Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2pk7a1 All beta proteins Trm112p-like Trm112p-like Trm112p-like Uncharacterized protein PFL1779 (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], SCOPe (2.08)
Ad2pk7a2 Artifacts Tags Tags Tags C-terminal Tags (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], SCOPe (2.08)
Bd2pk7b2 All beta proteins Trm112p-like Trm112p-like Trm112p-like Uncharacterized protein PFL1779 (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], SCOPe (2.08)
Bd2pk7b3 Artifacts Tags Tags Tags C-terminal Tags (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyTrm112p-like8023402 4001744 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTrm112p-like8035782 3000328 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyTrm112p-like8035782 3000328 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUNK_F_TYPEe2pk7A1 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: UNK_F_TYPEECOD (1.6)
BUNK_F_TYPEe2pk7B1 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: UNK_F_TYPEECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
B2.20.25.10 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF03966Trm112p-like protein (Trm112p)Trm112p-like proteinThe function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA ...The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W [1]. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast [2]. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices [2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR005651Trm112-likeFamily