2P8U | pdb_00002p8u

Crystal structure of human 3-hydroxy-3-methylglutaryl CoA synthase I

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2p8uB1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F:	ECOD (develop294)
A		e2p8uA1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal (HMG_CoA_synt_C)	Hydroxymethylglutaryl-coenzyme A synthase C terminal		Domain
A, B	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal (HMG_CoA_synt_N)	Hydroxymethylglutaryl-coenzyme A synthase N terminal		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity hydroxymethylglutaryl-CoA synthase activity acyltransferase activity acyltransferase activity, acyl groups converted into alkyl on transfer transferase activity catalytic activity	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process lipid metabolic process isoprenoid biosynthetic process lipid biosynthetic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate biosynthetic process isoprenoid biosynthetic process via mevalonate farnesyl diphosphate biosynthetic process, mevalonate pathway terpenoid metabolic process isoprenoid metabolic process secondary alcohol biosynthetic process small molecule biosynthetic process cholesterol biosynthetic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process secondary alcohol metabolic process sterol biosynthetic process alcohol biosynthetic process steroid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010122	Hydroxymethylglutaryl-CoA synthase, eukaryotic	Family
A, B	IPR013746	Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain	Domain
A, B	IPR016039	Thiolase-like	Homologous Superfamily
A, B	IPR013528	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	Domain
A, B	IPR000590	Hydroxymethylglutaryl-coenzyme A synthase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q01581	Pick disease spina bifida Alzheimer disease ductal breast carcinoma in situ hydrolethalus syndrome lung carcinoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm psoriasis atypical teratoid rhabdoid tumor esophageal adenocarcinoma invasive ductal breast carcinoma malignant ependymoma oligodendroglioma Pick disease spina bifida Alzheimer disease ductal breast carcinoma in situ hydrolethalus syndrome lung carcinoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm psoriasis atypical teratoid rhabdoid tumor esophageal adenocarcinoma invasive ductal breast carcinoma malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia sinusitis Crohn disease Gaucher disease large cell medulloblastoma malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	SCY	Parent Component: CYS RESID: AA0056 PSI-MOD : S-acetyl-L-cysteine MOD:00065

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.