2OQM | pdb_00002oqm

Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2oqmd2	All alpha proteins	DinB/YfiT-like putative metalloenzymes	DinB/YfiT-like putative metalloenzymes	Sden0562-like	Hypothetical protein Sden0562	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
D	d2oqmd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
C	d2oqmc2	All alpha proteins	DinB/YfiT-like putative metalloenzymes	DinB/YfiT-like putative metalloenzymes	Sden0562-like	Hypothetical protein Sden0562	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
C	d2oqmc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
B	d2oqmb2	All alpha proteins	DinB/YfiT-like putative metalloenzymes	DinB/YfiT-like putative metalloenzymes	Sden0562-like	Hypothetical protein Sden0562	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
B	d2oqmb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
A	d2oqma1	All alpha proteins	DinB/YfiT-like putative metalloenzymes	DinB/YfiT-like putative metalloenzymes	Sden0562-like	Hypothetical protein Sden0562	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)
A	d2oqma2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella denitrificans ) [TaxId: 192073 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	DinB/YfiT-like putative metalloenzymes	8035260	3001308	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DinB/YfiT-like putative metalloenzymes	8035260	3001308	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DinB/YfiT-like putative metalloenzymes	8035260	3001308	SCOP2B (2022-06-29)
A	SCOP2 Family	Sden0562-like	8022880	4001388	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DinB/YfiT-like putative metalloenzymes	8035260	3001308	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DUF1993	e2oqmD1	A: alpha bundles	X: YfiT-like putative metal-dependent hydrolases (From Topology)	H: YfiT-like putative metal-dependent hydrolases (From Topology)	T: YfiT-like putative metal-dependent hydrolases	F: DUF1993	ECOD (1.6)
C	DUF1993	e2oqmC1	A: alpha bundles	X: YfiT-like putative metal-dependent hydrolases (From Topology)	H: YfiT-like putative metal-dependent hydrolases (From Topology)	T: YfiT-like putative metal-dependent hydrolases	F: DUF1993	ECOD (1.6)
B	DUF1993	e2oqmB1	A: alpha bundles	X: YfiT-like putative metal-dependent hydrolases (From Topology)	H: YfiT-like putative metal-dependent hydrolases (From Topology)	T: YfiT-like putative metal-dependent hydrolases	F: DUF1993	ECOD (1.6)
A	DUF1993	e2oqmA1	A: alpha bundles	X: YfiT-like putative metal-dependent hydrolases (From Topology)	H: YfiT-like putative metal-dependent hydrolases (From Topology)	T: YfiT-like putative metal-dependent hydrolases	F: DUF1993	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.120.450	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	dinb family like domain	CATH (4.3.0)
C	1.20.120.450	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	dinb family like domain	CATH (4.3.0)
B	1.20.120.450	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	dinb family like domain	CATH (4.3.0)
A	1.20.120.450	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	dinb family like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09351	Domain of unknown function (DUF1993) (DUF1993)	Domain of unknown function (DUF1993)	This family of proteins are functionally uncharacterised.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018531	Protein of unknown function DUF1993	Family
A, B, C, D	IPR034660	DinB/YfiT-like putative metalloenzymes	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.