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 2OKX | pdb_00002okx

Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyBacterial alpha-L-rhamnosidase-like 8046913 4005365 SCOP2 (2022-06-29)
ASCOP2 FamilyAlpha-L-rhamnosidase C-terminal domain-like 8046916 4005366 SCOP2 (2022-06-29)
ASCOP2 Familyalpha-L-rhamnosidase precatalytic domain-like 8047398 4005623 SCOP2 (2022-06-29)
ASCOP2 FamilyAlpha-L-rhamnosidase N-terminal domain-like 8050959 4007126 SCOP2 (2022-06-29)
ASCOP2 FamilyAlpha-L-rhamnosidase N-terminal domain-like 8051903 4007126 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySix-hairpin glycosidases 8051899 3000970 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYicI C-terminal domain-like 8051900 3000267 SCOP2 (2022-06-29)
ASCOP2 Superfamilygalactose-binding domain-like 8051901 3000087 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAlpha-L-rhamnosidase associated domain -like 8051902 3002069 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAlpha-L-rhamnosidase associated domain -like 8051904 3002069 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BBac_rhamnoside2okxB1 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: Bac_rhamnosidECOD (v295.2)
BRhaB_D2e2okxB3 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: RhaB_D2ECOD (v295.2)
BBac_rhamnosid6He2okxB4 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: Bac_rhamnosid6HECOD (v295.2)
BP2X_receptore2okxB5 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: P2X_receptorECOD (v295.2)
ABac_rhamnoside2okxA1 A: alpha arraysX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: Bac_rhamnosidECOD (v295.2)
ADEPe2okxA4 A: alpha arraysX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: DEPECOD (v295.2)
AGlyco_hydro_92e2okxA3 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: Glyco_hydro_92ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)
B2.60.420.10 Mainly Beta Sandwich Maltose phosphorylase, domain 3 Maltose phosphorylase, domain 3CATH (4.3.0)
B1.50.10.10 Mainly Alpha Alpha/alpha barrel Glycosyltransferase CATH (4.3.0)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)
A2.60.420.10 Mainly Beta Sandwich Maltose phosphorylase, domain 3 Maltose phosphorylase, domain 3CATH (4.3.0)
A1.50.10.10 Mainly Alpha Alpha/alpha barrel Glycosyltransferase CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Rhamnosidase B- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR012341Six-hairpin glycosidase-like superfamilyHomologous Superfamily
A, B
IPR035398Alpha-L-rhamnosidase C-terminal domainDomain
A, B
IPR035396Alpha-L-rhamnosidase, six-hairpin glycosidase domainDomain
A, B
IPR008928Six-hairpin glycosidase superfamilyHomologous Superfamily
A, B
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
A, B
IPR013737Bacterial alpha-L-rhamnosidase N-terminalDomain
A, B
IPR048653Alpha-L-rhamnosidase, domain D2Domain
A, B
IPR008902Alpha-L-rhamnosidase, concanavalin-like domainDomain