2OJ5 | pdb_00002oj5

Crystal Structure of Reovirus T3D Attachment Protein Sigma1 head domain wild-type at 1.75 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2oj5f2	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
F	d2oj5f1	All beta proteins	Triple beta-spiral	Fibre shaft of virus attachment proteins	automated matches	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
E	d2oj5e1	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
D	d2oj5d1	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
C	d2oj5c2	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
C	d2oj5c1	All beta proteins	Triple beta-spiral	Fibre shaft of virus attachment proteins	automated matches	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
B	d2oj5b2	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
B	d2oj5b1	All beta proteins	Triple beta-spiral	Fibre shaft of virus attachment proteins	automated matches	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)
A	d2oj5a1	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Reovirus attachment protein sigma 1 head domain	automated matches	(Reovirus sp. ) [TaxId: 10891 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Virus attachment protein globular domain	8038299	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	HTHP	e2oj5F1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
E	HTHP	e2oj5E1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
D	HTHP	e2oj5D1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
C	HTHP	e2oj5C1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
B	HTHP	e2oj5B1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
A	LMWPc	e2oj5A1	A: alpha bundles	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: LMWPc	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)
E	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)
D	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)
C	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)
B	4.10.80.170	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4		CATH (4.3.0)
B	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)
A	2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Viral attachment protein sigma 1	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid icosahedral viral capsid virion component viral outer capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002592	Outer capsid protein sigma-1, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.