2OHC | pdb_00002ohc

structural and mutational analysis of tRNA-intron splicing endonuclease from Thermoplasma acidophilum DSM1728

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Vinculin	e2ohcB8	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)
A	Vinculin	e2ohcA8	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Vinculin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF22490	tRNA-splicing endonuclease, linker domain (EndA_linker)	tRNA-splicing endonuclease, linker domain	This domain is found in tRNA-splicing endonuclease from the archaea Thermoplasma acidophilum (EndA), which is organised into two major domains, the N-terminal domain and the catalytic domain (Pfam:PF01974), with a linker region between them (this ent ...	This domain is found in tRNA-splicing endonuclease from the archaea Thermoplasma acidophilum (EndA), which is organised into two major domains, the N-terminal domain and the catalytic domain (Pfam:PF01974), with a linker region between them (this entry). This domain consists of an alpha-helix and three consecutive beta-strands [1].	Domain
A, B	PF01974	tRNA intron endonuclease, catalytic C-terminal domain (tRNA_int_endo)	tRNA intron endonuclease, catalytic C-terminal domain	Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	tRNA-splicing endonuclease	binding nucleic acid binding tRNA-specific ribonuclease activity endonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity, acting on a tRNA tRNA-intron lyase activity phosphorus-oxygen lyase activity nuclease activity RNA endonuclease activity lyase activity catalytic activity	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA splicing, via endonucleolytic cleavage and ligation nucleic acid biosynthetic process biosynthetic process RNA splicing, via endonucleolytic cleavage and ligation tRNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA splicing, via endonucleolytic cleavage and ligation nucleic acid biosynthetic process biosynthetic process RNA splicing, via endonucleolytic cleavage and ligation tRNA processing metabolic process cellular process RNA processing macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR006677	tRNA intron endonuclease, catalytic domain-like	Domain
A, B	IPR036740	tRNA intron endonuclease, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR023516	tRNA-splicing endonuclease, archaeal long subfamily	Family
A, B	IPR011856	tRNA endonuclease-like domain superfamily	Homologous Superfamily
A, B	IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	Homologous Superfamily
A, B	IPR006676	tRNA-splicing endonuclease	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.