2OGK | pdb_00002ogk

Crystal structure of protein AF2318 from Archaeglobus fulgidus, Pfam DUF54

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2ogkd_	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypothetical protein AF2318	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C	d2ogkc_	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypothetical protein AF2318	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d2ogkb_	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypothetical protein AF2318	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d2ogka1	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypothetical protein AF2318	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	RL5-like	8035080	3001709	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RL5-like	8035080	3001709	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RL5-like	8035080	3001709	SCOP2B (2022-06-29)
A	SCOP2 Family	SSO1042-like	8022700	4002138	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RL5-like	8035080	3001709	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	tRNA_int_endo_N	e2ogkD1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: tRNA_int_endo_N	ECOD (develop294)
C	tRNA_int_endo_N	e2ogkC1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: tRNA_int_endo_N	ECOD (develop294)
B	tRNA_int_endo_N	e2ogkB1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: tRNA_int_endo_N	ECOD (develop294)
A	RNA_binding	e2ogkA1	A: a+b two layers	X: Ribosomal protein L5	H: Ribosomal protein L5	T: Ribosomal protein L5	F: RNA_binding	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
C	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
B	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
A	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01877	RNA binding (RNA_binding)	RNA binding	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
A, B, C, D	IPR002739	RNA-binding protein PAB1135-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.