2OF5 | pdb_00002of5

Oligomeric Death Domain complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	DEATH domain	8077789	3000069	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	DEATH domain	8077789	3000069	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	DEATH domain	8077789	3000069	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	DEATH domain	8077789	3000069	SCOP2B (2022-06-29)
H	SCOP2 Family	DEATH domain, DD	8077788	4000378	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	DEATH domain	8077789	3000069	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Biopterin_H	e2of5L1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
K	Biopterin_H	e2of5K1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
J	Biopterin_H	e2of5J1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
I	Biopterin_H	e2of5I1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
H	SH3_1	e2of5H1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SH3_1	ECOD (v294.1)
G	Biopterin_H	e2of5G1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
F	Biopterin_H	e2of5F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
E	Biopterin_H	e2of5E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
D	Biopterin_H	e2of5D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
C	Biopterin_H	e2of5C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
B	Biopterin_H	e2of5B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
A	Biopterin_H	e2of5A1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
K	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
J	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
I	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
H	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
G	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
F	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
E	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
D	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
C	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
B	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
A	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H, I, J, K, L	PF00531	Death domain (Death)	Death domain		Domain
A, B, C, D, E A, B, C, D, E, F, G	PF00531	Death domain (Death)	Death domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H, I, J, K, L	Leucine-rich repeat and death domain-containing protein	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity endopeptidase activity protein binding binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death positive regulation of programmed cell death positive regulation of biological process positive regulation of apoptotic process positive regulation of cellular process signaling signal transduction cell communication extrinsic apoptotic signaling pathway via death domain receptors cell surface receptor signaling pathway extrinsic apoptotic signaling pathway apoptotic signaling pathway signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator intracellular signal transduction signal transduction in response to DNA damage regulation of signaling regulation of signal transduction canonical NF-kappaB signal transduction regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication regulation of canonical NF-kappaB signal transduction	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol nucleoplasm protein-containing complex catalytic complex peptidase complex endopeptidase complex Golgi apparatus endomembrane system
A, B, C, D, E A, B, C, D, E, F, G	Death domain-containing protein CRADD	death domain binding protein binding binding protein domain specific binding enzyme binding protease binding protein-macromolecule adaptor activity molecular adaptor activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway response to mechanical stimulus response to external stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator intracellular signal transduction signal transduction in response to DNA damage extrinsic apoptotic signaling pathway via death domain receptors cell surface receptor signaling pathway extrinsic apoptotic signaling pathway	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol protein-containing complex catalytic complex peptidase complex endopeptidase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H, I, J, K, L	IPR019502	Peptidase S68, pidd	Family
H, I, J, K, L	IPR003591	Leucine-rich repeat, typical subtype	Repeat
H, I, J, K, L	IPR000906	ZU5 domain	Domain
H, I, J, K, L	IPR011029	Death-like domain superfamily	Homologous Superfamily
H, I, J, K, L	IPR001611	Leucine-rich repeat	Repeat
H, I, J, K, L	IPR000488	Death domain	Domain
H, I, J, K, L	IPR050216	Leucine-rich repeat domain-containing protein	Family
H, I, J, K, L	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR037939	Death domain-containing protein CRADD	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR037926	CRADD, Death domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR000488	Death domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR001315	CARD domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR042148	RAIDD, CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
H, I, J, K, L	Pharos: Q9HB75	renal cell carcinoma chromophobe renal cell carcinoma collecting duct carcinoma papillary renal cell carcinoma sarcomatoid renal cell carcinoma bronchitis clear cell renal carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma medulloblastoma chronic obstructive pulmonary disease Conventional (Clear Cell) Renal Cell Carcinoma osteosarcoma renal carcinoma
A, B, C, D, E A, B, C, D, E, F, G	Pharos: P78560	renal cell carcinoma intellectual disability, autosomal recessive 34 chromophobe renal cell carcinoma intellectual disability papillary renal cell carcinoma collecting duct carcinoma sarcomatoid renal cell carcinoma Alzheimer disease Conventional (Clear Cell) Renal Cell Carcinoma lissencephaly spectrum disorders pancreatic ductal adenocarcinoma renal carcinoma tuberculosis autosomal recessive non-syndromic intellectual disability clear cell renal carcinoma renal cell carcinoma intellectual disability, autosomal recessive 34 chromophobe renal cell carcinoma intellectual disability papillary renal cell carcinoma collecting duct carcinoma sarcomatoid renal cell carcinoma Alzheimer disease Conventional (Clear Cell) Renal Cell Carcinoma lissencephaly spectrum disorders pancreatic ductal adenocarcinoma renal carcinoma tuberculosis autosomal recessive non-syndromic intellectual disability clear cell renal carcinoma malignant mesothelioma breast cancer osteoarthritis psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.