2OD0 | pdb_00002od0

The crystal structure of gene product VP1028 from Vibrio parahaemolyticus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2od0b_	Alpha and beta proteins (a+b)	Secretion chaperone-like	YgaC/TfoX-N like	TfoX N-terminal domain-like	Hypothetical protein VP1028	(Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ],	SCOPe (2.08)
A	d2od0a1	Alpha and beta proteins (a+b)	Secretion chaperone-like	YgaC/TfoX-N like	TfoX N-terminal domain-like	Hypothetical protein VP1028	(Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	YgaC/TfoX-N like	8035060	3001488	SCOP2B (2022-06-29)
A	SCOP2 Family	TfoX N-terminal domain-like	8022680	4002621	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YgaC/TfoX-N like	8035060	3001488	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Anthrax_toxA	e2od0B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Anthrax_toxA	ECOD (v294.1)
A	TfoX_N	e2od0A1	A: a+b two layers	X: Type III secretory system chaperone-like	H: YgaC/TfoX-N like	T: YgaC/TfoX-N like	F: TfoX_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1460.30	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
A	3.30.1460.30	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical protein VP1028	-	DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR047525	DNA transformation protein TfoX-like	Family
A, B	IPR007076	TfoX, N-terminal	Domain
A, B	IPR026256	DNA transformation protein TfoX-like, gammaproteobacteria	Family
A, B	IPR007077	TfoX, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.