2OD0

The crystal structure of gene product VP1028 from Vibrio parahaemolyticus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2od0a1	Alpha and beta proteins (a+b)	Secretion chaperone-like	YgaC/TfoX-N like	TfoX N-terminal domain-like	Hypothetical protein VP1028	(Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ],	SCOPe (2.08)
B	d2od0b_	Alpha and beta proteins (a+b)	Secretion chaperone-like	YgaC/TfoX-N like	TfoX N-terminal domain-like	Hypothetical protein VP1028	(Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TfoX N-terminal domain-like	8022680	4002621	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YgaC/TfoX-N like	8035060	3001488	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YgaC/TfoX-N like	8035060	3001488	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04993	e2od0A1	A: a+b two layers	X: Type III secretory system chaperone-like	H: YgaC/TfoX-N like (From Topology)	T: YgaC/TfoX-N like	F: PF04993	ECOD (1.6)
B	PF04993	e2od0B1	A: a+b two layers	X: Type III secretory system chaperone-like	H: YgaC/TfoX-N like (From Topology)	T: YgaC/TfoX-N like	F: PF04993	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1460.30	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
B	3.30.1460.30	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04993	TfoX N-terminal domain (TfoX_N)	TfoX N-terminal domain	TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes [1]. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some ...	TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes [1]. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some proteins suggesting this is an autonomous domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical protein VP1028	-	DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR047525	DNA transformation protein TfoX-like	Family
A, B	IPR007076	TfoX, N-terminal	Domain
A, B	IPR026256	DNA transformation protein TfoX-like, gammaproteobacteria	Family
A, B	IPR007077	TfoX, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.