2OBK | pdb_00002obk

X-Ray structure of the putative Se binding protein from Pseudomonas fluorescens. Northeast Structural Genomics Consortium target PlR6.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2obkf_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
H	d2obkh_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
G	d2obkg_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
E	d2obke_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
D	d2obkd_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
C	d2obkc_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
B	d2obkb_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)
A	d2obka_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Selenoprotein W-related	automated matches	(Pseudomonas protegens Pf-5 ) [TaxId: 220664 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2 Family	Selenoprotein W-related	8060409	4002953	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Thioredoxin-like	8060410	3000031	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thioredoxin-like	8060410	3000031	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	ACR_tran	e2obkF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
H	ACR_tran	e2obkH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
G	ACR_tran	e2obkG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
E	ACR_tran	e2obkE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
D	ACR_tran	e2obkD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
C	ACR_tran	e2obkC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
B	ACR_tran	e2obkB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
A	ACPS	e2obkA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ACPS	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011893	Selenoprotein, Rdx-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.