2NXP | pdb_00002nxp

Structure of NTD2 domain of the human TAF5 subunit of TFIID

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2nxph_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d2nxpg_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d2nxpf_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d2nxpe_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2nxpd_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2nxpc_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2nxpb_	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2nxpa1	Alpha and beta proteins (a+b)	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	TAF5 subunit of TFIID	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2B (2022-06-29)
A	SCOP2 Family	Taf5 N-terminal domain-like	8022540	4002620	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Taf5 N-terminal domain-like	8034920	3001495	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	TFIID_NTD2	e2nxpH1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
G	TFIID_NTD2	e2nxpG1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
F	TFIID_NTD2	e2nxpF1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
E	TFIID_NTD2	e2nxpE1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
D	TFIID_NTD2	e2nxpD1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
C	TFIID_NTD2	e2nxpC1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
B	TFIID_NTD2	e2nxpB1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)
A	TFIID_NTD2	e2nxpA1	A: alpha superhelices	X: Taf5 N-terminal domain-like (From Topology)	H: Taf5 N-terminal domain-like (From Topology)	T: Taf5 N-terminal domain-like	F: TFIID_NTD2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
G	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
F	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
E	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
D	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
C	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
B	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)
A	1.25.40.500	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	TFIID subunit TAF5, NTD2 domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF04494	WD40 associated region in TFIID subunit, NTD2 domain (TFIID_NTD2)	WD40 associated region in TFIID subunit, NTD2 domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Transcription initiation factor TFIID subunit 5	general transcription initiation factor activity RNA polymerase II general transcription initiation factor activity identical protein binding protein binding binding	transcription preinitiation complex assembly RNA metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process cellular component assembly transcription by RNA polymerase II protein-containing complex assembly cellular component organization or biogenesis transcription initiation at RNA polymerase II promoter transcription preinitiation complex assembly RNA metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process cellular component assembly transcription by RNA polymerase II protein-containing complex assembly cellular component organization or biogenesis transcription initiation at RNA polymerase II promoter protein-containing complex organization protein-DNA complex assembly primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process biosynthetic process RNA polymerase II preinitiation complex assembly cellular process metabolic process macromolecule metabolic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of transcription initiation by RNA polymerase II biological regulation regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process mRNA transcription by RNA polymerase II mRNA transcription mRNA metabolic process cellular response to stimulus response to stimulus regulation of cellular response to stress cellular response to stress response to stress regulation of response to stress DNA repair DNA metabolic process regulation of DNA repair DNA damage response regulation of response to stimulus regulation of DNA metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton RNA polymerase II transcription regulator complex membrane-bounded organelle RNA polymerase II, holoenzyme protein-containing complex nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton RNA polymerase II transcription regulator complex membrane-bounded organelle RNA polymerase II, holoenzyme protein-containing complex nucleus membrane-enclosed lumen nuclear protein-containing complex transcription regulator complex transferase complex intracellular organelle lumen nucleoplasm catalytic complex intracellular membrane-bounded organelle transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen RNA polymerase complex transcription factor TFIID complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen chromatin chromosome peptidase complex histone acetyltransferase complex acetyltransferase complex protein acetyltransferase complex SAGA-type complex SAGA complex transcription factor TFTC complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007582	TFIID subunit TAF5, NTD2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006594	LIS1 homology motif	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR037264	TFIID subunit TAF5, NTD2 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001680	WD40 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q15542	anorexia nervosa malignant mesothelioma subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type medulloblastoma ulcerative colitis lung cancer osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.