2MJZ | pdb_00002mjz

Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
I	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
Z	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
Y	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
X	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
W	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
V	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
U	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
T	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
S	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
R	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
Q	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
P	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
O	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
N	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
M	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
L	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
K	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
J	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
IA [auth i]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
HA [auth h]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
H	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
GA [auth g]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
G	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
FA [auth f]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
F	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
EA [auth e]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
E	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
DA [auth d]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
D	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
CA [auth c]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
C	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
BA [auth b]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
B	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
AA [auth a]	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)
A	1.20.5.80	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF19199	Phage major coat protein, Gp8 (Phage_coatGP8)	Phage major coat protein, Gp8	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Capsid protein G8P	-	-	cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR008020	Capsid protein G8P	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR023390	Bacteriophage M13, G8P, capsid domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	OPM	Transmembrane	Bitopic proteins	Inovirus (filamentous phage) major coat protein	Major coat protein

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	MemProtMD	Annotated as membrane protein by MemProtMD