2LME | pdb_00002lme

Solid-state NMR structure of the membrane anchor domain of the trimeric autotransporter YadA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AYadA_anchore2lmeA1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: YadA_anchorECOD (1.6)
BYadA_anchore2lmeB1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: YadA_anchorECOD (1.6)
CYadA_anchore2lmeC1 A: a+b two layersX: Pili subunits (From Topology)H: Pili subunits (From Topology)T: Pili subunitsF: YadA_anchorECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase Chain: A,domain 2CATH (4.3.0)
B3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase Chain: A,domain 2CATH (4.3.0)
C3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase Chain: A,domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Adhesin yadA

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR008635Trimeric autotransporter adhesin YadA-like, stalk domainDomain
A, B, C
IPR008640Trimeric autotransporter adhesin YadA-like, head domainDomain
A, B, C
IPR005594Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domainDomain
A, B, C
IPR008126Outer membrane adhesion, YersiniaFamily
A, B, C
IPR011049Serralysin-like metalloprotease, C-terminalHomologous Superfamily
A, B, C
IPR045584Pilin-likeHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C
OPMTransmembraneBeta-barrel transmembraneTrimeric autotransporter (n=12,S=12)Autotransporter-2 (AT-2)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C
mpstrucTRANSMEMBRANE PROTEINS: BETA-BARRELOuter Membrane AutotransportersYadA trimeric adhesin autotransporter