2LE8 | pdb_00002le8

The protein complex for DNA replication

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2le8B1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Phage tail protein-like	T: DUF4488	F:	ECOD (20:10:01)
A		e2le8A1	A: Globin-like	X: Globin-like	H: Globin-like	T: Cytidylate_kin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.870	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF18263	MCM6 C-terminal winged-helix domain (WHD_MCM6)	MCM6 C-terminal winged-helix domain	The minichromosome maintenance (Mcm) complex is the replicative helicase in eukaryotic species, that plays essential roles in the initiation and elongation phases of DNA replication. During late M and early G(1), the Mcm complex is loaded onto chroma ...	The minichromosome maintenance (Mcm) complex is the replicative helicase in eukaryotic species, that plays essential roles in the initiation and elongation phases of DNA replication. During late M and early G(1), the Mcm complex is loaded onto chromatin to form prereplicative complex in a Cdt1-dependent manner. This entry represents the C-terminal domain of human Mcm6 which is the Cdt1 binding domain (CBD). The structure of CBD exhibits a typical winged helix fold that is generally involved in protein-nucleic acid interaction. The CBD failed to interact with DNA in experiments [1]. The CBD-Cdt1 interaction involves the helix-turn-helix motif of CBD [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	DNA replication factor Cdt1	chromatin binding binding DNA binding nucleic acid binding protein binding DNA polymerase binding enzyme binding	cellular process cell cycle mitotic cell cycle regulation of cellular process nuclear DNA replication cell cycle DNA replication regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle cell cycle process DNA-templated DNA replication regulation of biological process regulation of nuclear cell cycle DNA replication cellular process cell cycle mitotic cell cycle regulation of cellular process nuclear DNA replication cell cycle DNA replication regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle cell cycle process DNA-templated DNA replication regulation of biological process regulation of nuclear cell cycle DNA replication regulation of cell cycle process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication regulation of DNA-templated DNA replication metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process mitotic DNA replication pre-replicative complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization cellular component assembly mitotic pre-replicative complex assembly protein-containing complex assembly cellular component organization or biogenesis pre-replicative complex assembly involved in nuclear cell cycle DNA replication protein-containing complex organization pre-replicative complex assembly involved in cell cycle DNA replication protein-DNA complex assembly mitotic cell cycle process mitotic metaphase chromosome alignment metaphase chromosome alignment localization chromosome localization organelle localization mitotic sister chromatid segregation chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation organelle organization nuclear division nuclear chromosome segregation cell division negative regulation of cellular process negative regulation of biological process negative regulation of cell cycle positive regulation of DNA replication positive regulation of biological process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of DNA metabolic process response to carbohydrate response to stimulus response to chemical response to sorbitol response to oxygen-containing compound regulation of DNA-templated DNA replication initiation DNA replication initiation DNA replication preinitiation complex assembly cellular response to stimulus regulation of cell cycle phase transition signaling cell cycle phase transition intracellular signal transduction cell communication negative regulation of cell cycle phase transition signal transduction DNA replication checkpoint signaling DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling cell cycle DNA replication initiation mitotic DNA replication initiation nuclear cell cycle DNA replication initiation negative regulation of DNA-templated DNA replication negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA replication negative regulation of metabolic process negative regulation of DNA metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle chromosome chromosomal region kinetochore membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome nuclear body
A	DNA replication licensing factor MCM6	ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity macromolecular conformation isomerase activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity macromolecular conformation isomerase activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides identical protein binding protein binding DNA binding single-stranded DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA replication initiation regulation of DNA-templated DNA replication initiation regulation of biological process regulation of cellular process biological regulation nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process DNA-templated DNA replication DNA replication initiation regulation of DNA-templated DNA replication initiation regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of DNA-templated DNA replication regulation of nucleobase-containing compound metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination double-strand break repair via break-induced replication cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair mitotic DNA replication nuclear DNA replication cell cycle DNA replication mitotic cell cycle mitotic cell cycle process cell cycle cell cycle process	membrane-bounded organelle DNA replication preinitiation complex protein-containing complex intracellular anatomical structure protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle membrane-bounded organelle DNA replication preinitiation complex protein-containing complex intracellular anatomical structure protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle CMG complex nuclear lumen cytoplasm cytosol MCM complex chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR038090	DNA replication factor Cdt1, C-terminal WH domain superfamily	Homologous Superfamily
B	IPR032054	DNA replication factor Cdt1, C-terminal	Domain
B	IPR045173	DNA replication factor Cdt1	Family
B	IPR014939	CDT1 Geminin-binding domain-like	Domain
B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR008049	DNA replication licensing factor Mcm6	Family
A	IPR041024	Mcm6, C-terminal winged-helix domain	Domain
A	IPR031327	Mini-chromosome maintenance protein	Family
A	IPR018525	Mini-chromosome maintenance, conserved site	Conserved Site
A	IPR001208	MCM domain	Domain
A	IPR041562	MCM, AAA-lid domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR027925	MCM, N-terminal domain	Domain
A	IPR033762	MCM OB domain	Domain
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q9H211	Meier-Gorlin syndrome Meier-Gorlin syndrome 4 ovarian cancer psoriasis adrenal cortex carcinoma breast cancer glioblastoma invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma Primary microcephaly atopic eczema cancer hepatocellular carcinoma large cell medulloblastoma Meier-Gorlin syndrome Meier-Gorlin syndrome 4 ovarian cancer psoriasis adrenal cortex carcinoma breast cancer glioblastoma invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma Primary microcephaly atopic eczema cancer hepatocellular carcinoma large cell medulloblastoma malignant mesothelioma osteosarcoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor intellectual disability lung adenocarcinoma medulloblastoma microcephaly
A	Pharos: Q14566	Lactose Intolerance, Adult Type pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor tuberculosis adrenal cortex carcinoma endometriosis lactose intolerance large cell medulloblastoma lymphoplasmacytic lymphoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis atypical teratoid rhabdoid tumor esophageal adenocarcinoma Lactose Intolerance, Adult Type pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor tuberculosis adrenal cortex carcinoma endometriosis lactose intolerance large cell medulloblastoma lymphoplasmacytic lymphoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis atypical teratoid rhabdoid tumor esophageal adenocarcinoma lactose intolerance adult type lung adenocarcinoma malignant colon neoplasm nasopharyngeal carcinoma ovarian cancer plasma cell myeloma Sjogren syndrome breast cancer inborn errors of metabolism lung cancer malignant mesothelioma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.