2LDY | pdb_00002ldy

Solution structure of the RMM-CTD domains of human LINE-1 ORF1p

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	L1ORF1p CTD-like	8052163	3002096	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RNA-binding domain, RBD	8052166	3000110	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ion_trans_2	e2ldyA1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ion_trans_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1820	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	L1 transposable element, RRM domain	CATH (4.3.0)
A	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17490	L1 transposable element dsRBD-like domain (Tnp_22_dsRBD)	L1 transposable element dsRBD-like domain	This entry represents the double stranded RNA-binding-like domain.	Domain
A	PF02994	L1 transposable element RBD-like domain (Transposase_22)	L1 transposable element RBD-like domain	This entry represents the RBD-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ORF1 codes for a 40 kDa product	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding RNA binding nucleic acid binding single-stranded RNA binding identical protein binding protein binding DNA binding single-stranded DNA binding	cellular process transposition retrotransposition	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle cytoplasm supramolecular complex ribonucleoprotein granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle cytoplasm supramolecular complex ribonucleoprotein granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen cytoplasmic stress granule protein-containing complex ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR035301	L1 transposable element, trimerization domain	Domain
A	IPR043636	L1 transposable element, RRM domain	Domain
A	IPR004244	Transposase, L1	Family
A	IPR042566	L1 transposable element, C-terminal domain	Homologous Superfamily
A	IPR035300	L1 transposable element, dsRBD-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.