2L6Z | pdb_00002l6z

haddock model of GATA1NF:Lmo2LIM2-Ldb1LID with FOG


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B Superfamilybeta-beta-alpha zinc fingers 8033982 3001077 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8033981 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CLIM_N_1e2l6zC1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: LIM_N_1ECOD (1.6)
CKOG2181_1,LIM_C_3e2l6zC2 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: KOG2181_1,LIM_C_3ECOD (1.6)
Bzf-C2H2_22e2l6zB1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-C2H2_22ECOD (1.6)
AGATAe2l6zA1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: GATAECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich ProteinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF17916LIM interaction domain (LID) (LID)LIM interaction domain (LID)LIM-homeodomain (LIM-HD) proteins are transcription factors that are critical in the development of many cell types and tissues. The activity of LIM-HD proteins is dependent on the essential cofactor LIM domain-binding protein 1 (Ldb1). This entry re ...LIM-homeodomain (LIM-HD) proteins are transcription factors that are critical in the development of many cell types and tissues. The activity of LIM-HD proteins is dependent on the essential cofactor LIM domain-binding protein 1 (Ldb1). This entry represents a 30-residue LIM interaction domain (LID) that binds to the LIM domains of all LIM-HD and closely related LIM-only (LMO) proteins. Isl1 (Insulin gene enhancer protein 1) and Isl2 each contain a LID-like sequence in their C-terminal regions, the Lhx3-binding domain (LBD), which binds the LIM domains Lhx3 and Lhx4 [1].
Domain
PF00412LIM domain (LIM)LIM domainThis family represents two copies of the LIM structural domain. Domain
PF00320GATA zinc finger (GATA)GATA zinc fingerThis domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
LIM domain only 2, linker, LIM domain-binding protein 1
Zinc finger protein ush
Erythroid transcription factor