2KZ4 | pdb_00002kz4

Solution structure of protein SF1141 from Shigella flexneri 2a, Northeast structural genomics consortium (NESG) target SFT2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPhage head-tail joining protein-like 8106795 4005560 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhage head-tail joining protein-like 8106796 3002861 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhage_H_T_joine2kz4A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_H_T_joinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.10.270 Mainly Beta Beta Barrel Thrombin, subunit H Bacteriophage SPP1 head-tail adaptor proteinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05521Phage head completion protein (Phage_HCP)Phage head completion proteinThis entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conform ...This entry represents the head completion protein (gp16) found in Siphoviridae bacteriophages. This protein functions as a stopper in the portal-tail connector complex, locking the viral DNA inside the capsid. During infection, it undergoes a conformational change, opening by a diaphragm-like motion to allow the genome to exit the capsid through the tail tube to the host cell. The protein also functions as a docking platform for the preassembled tail. The connector complex is essential for stable viral particle assembly and controlled genome release during host infection.
Domain

InterPro: Protein Family Classification InterPro Database Homepage