2KQ9 | pdb_00002kq9

Solution structure of DnaK suppressor protein from Agrobacterium tumefaciens C58. Northeast Structural Genomics Consortium target AtT12/Ontario Center for Structural Proteomics Target atc0888

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DksA-like_N	e2kq9A1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: DksA-like_N	ECOD (v294.1)
A	Piwi	e2kq9A4	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Piwi	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.910	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	DksA, coiled-coil domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21173	DnaK suppressor protein-like, N-terminal domain (DksA-like_N)	DnaK suppressor protein-like, N-terminal domain	This domain is found at the N-terminal end of DnaK suppressor protein from Agrobacterium fabrum (DksA) and similar proteins predominantly found in Alphaproteobacteria. This domain shows an all-alpha structure and is often found N-terminal to Pfam:PF ...	This domain is found at the N-terminal end of DnaK suppressor protein from Agrobacterium fabrum (DksA) and similar proteins predominantly found in Alphaproteobacteria. This domain shows an all-alpha structure and is often found N-terminal to Pfam:PF01258.	Domain
A	PF01258	Prokaryotic dksA/traR C4-type zinc finger (zf-dskA_traR)	Prokaryotic dksA/traR C4-type zinc finger	This domain is found in the members of the DksA/TraR family. It adopts a treble clef fold [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DnaK suppressor protein	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037187	DksA, N-terminal domain superfamily	Homologous Superfamily
A	IPR000962	Zinc finger, DksA/TraR C4-type	Domain
A	IPR048487	DnaK suppressor protein-like, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.