2K7Y | pdb_00002k7y

Solution fold of HIV-1 Virus protein U cytoplasmic domain in the presence of DPC micelles

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2k7ya1	Small proteins	HIV-1 VPU cytoplasmic domain	HIV-1 VPU cytoplasmic domain	HIV-1 VPU cytoplasmic domain	automated matches	HIV-1 (Human immunodeficiency virus type 1 (SF162 ISOLATE) ) [TaxId: 11691 ],	SCOPe (2.08)
A	d2k7ya2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HIV-1 (Human immunodeficiency virus type 1 (SF162 ISOLATE) ) [TaxId: 11691 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	HIV-1 VPU cytoplasmic domain	8039004	3001055	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Vpu	e2k7yA1	A: few secondary structure elements	X: HIV-1 VPU cytoplasmic domain (From Topology)	H: HIV-1 VPU cytoplasmic domain (From Topology)	T: HIV-1 VPU cytoplasmic domain	F: Vpu	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.195.10	Mainly Alpha	Orthogonal Bundle	Cytoplasmic domain of VPU protein	HIV-1 VPU cytoplasmic domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein Vpu	protein binding binding signaling receptor binding CD4 receptor binding monoatomic cation transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity monoatomic ion channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity lipid binding	symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated perturbation of host signal transduction pathway exit from host cell viral process viral release from host cell viral life cycle symbiont-mediated-mediated suppression of host tetherin activity receptor catabolic process catabolic process receptor metabolic process metabolic process cellular process macromolecule metabolic process macromolecule catabolic process	cell periphery cellular anatomical structure plasma membrane membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008187	Vpu protein	Family
A	IPR009032	Vpu protein cytoplasmic domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Bitopic proteins	Vpu protein	Vpu protein

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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