Annotations: 2JYE

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Granulin repeat	8038397	3000520	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PI_PP_I	e2jyeA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PI_PP_I	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.25.160	Mainly Beta	Ribbon	Laminin	Granulin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00396	Granulin (Granulin)	Granulin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Granulin A	molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity protein binding binding protein-folding chaperone binding RNA binding nucleic acid binding cytokine activity	cellular response to stimulus multicellular organismal process regulation of cellular process response to stimulus cell projection organization positive regulation of neuron projection regeneration regulation of cellular response to stress neuron projection development regeneration neuron projection regeneration positive regulation of developmental process multicellular organism development neuron differentiation cell differentiation anatomical structure development cellular response to stimulus multicellular organismal process regulation of cellular process response to stimulus cell projection organization positive regulation of neuron projection regeneration regulation of cellular response to stress neuron projection development regeneration neuron projection regeneration positive regulation of developmental process multicellular organism development neuron differentiation cell differentiation anatomical structure development positive regulation of cell projection organization response to wounding system development positive regulation of response to wounding developmental process regulation of biological process regulation of axon regeneration regulation of cell projection organization response to external stimulus nervous system development generation of neurons regulation of response to stimulus regulation of neuron projection regeneration regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process cellular developmental process regulation of response to external stimulus positive regulation of biological process cell development response to axon injury regulation of response to wounding positive regulation of response to stimulus cellular component organization neurogenesis positive regulation of response to external stimulus cellular response to stress axon regeneration positive regulation of neuron projection development regulation of response to stress response to stress cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization biological regulation axon development neuron development cellular process positive regulation of axon regeneration regulation of plasma membrane bounded cell projection organization regulation of protein stability regulation of biological quality protein stabilization sensory organ development eye development animal organ development retina development in camera-type eye visual system development camera-type eye development sensory system development primary metabolic process gene expression macromolecule biosynthetic process protein maturation positive regulation of protein folding protein folding biosynthetic process regulation of protein folding metabolic process protein metabolic process macromolecule metabolic process regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of proteolysis proteolysis positive regulation of macromolecule metabolic process positive regulation of aspartic-type peptidase activity regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of proteolysis regulation of metabolic process neuron apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process positive regulation of neuron apoptotic process programmed cell death regulation of neuron apoptotic process maintenance of synapse structure cell junction maintenance cell junction organization cellular component maintenance synapse organization homeostatic process intracellular pH reduction regulation of intracellular pH vacuolar acidification lysosomal lumen acidification cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to biotic stimulus defense response to bacterium positive regulation of defense response to bacterium response to bacterium response to external biotic stimulus regulation of defense response to bacterium defense response response to other organism positive regulation of defense response catabolic process protein catabolic process in the vacuole lysosomal protein catabolic process protein catabolic process macromolecule catabolic process positive regulation of locomotion regulation of cell motility endothelial cell migration positive regulation of cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration regulation of endothelial cell migration cell migration cell motility locomotion macrophage activation involved in immune response immune response cell activation cell activation involved in immune response myeloid leukocyte activation myeloid cell activation involved in immune response leukocyte activation immune effector process macrophage activation microglial cell activation involved in immune response immune system process leukocyte activation involved in inflammatory response leukocyte activation involved in immune response microglial cell activation inflammatory response glial cell activation neuroinflammatory response regulation of macrophage activation negative regulation of inflammatory response regulation of leukocyte activation negative regulation of biological process regulation of cell activation regulation of neuroinflammatory response negative regulation of cellular process regulation of immune system process regulation of multicellular organismal process negative regulation of response to stimulus regulation of inflammatory response negative regulation of microglial cell activation negative regulation of cell activation negative regulation of immune system process negative regulation of response to external stimulus negative regulation of defense response regulation of microglial cell activation negative regulation of multicellular organismal process negative regulation of neuroinflammatory response negative regulation of leukocyte activation negative regulation of macrophage activation cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation chordate embryonic development embryo development in utero embryonic development hatching embryo development ending in birth or egg hatching blastocyst hatching organism emergence from protective structure blastocyst development negative regulation of neuron apoptotic process negative regulation of programmed cell death negative regulation of apoptotic process signaling signal transduction cell communication lysosome organization organelle organization vacuole organization lytic vacuole organization behavior locomotory behavior exploration behavior locomotory exploration behavior multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process neutrophil activation regulation of neutrophil activation negative regulation of neutrophil activation granulocyte activation developmental growth growth trophectodermal cell proliferation blastocyst growth angiogenesis regulation of vasculature development tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport lysosomal transport establishment of localization regulation of growth regulation of developmental growth positive regulation of trophectodermal cell proliferation regulation of trophectodermal cell proliferation regulation of immune effector process regulation of cell differentiation regulation of cell development regulation of respiratory burst involved in inflammatory response respiratory burst involved in defense response regulation of innate immune response negative regulation of immune response negative regulation of metabolic process negative regulation of immune effector process defense response to other organism respiratory burst involved in inflammatory response regulation of immune response negative regulation of respiratory burst involved in inflammatory response negative regulation of response to biotic stimulus negative regulation of respiratory burst innate immune response regulation of respiratory burst production of molecular mediator involved in inflammatory response defense response to symbiont respiratory burst negative regulation of innate immune response positive regulation of inflammatory response regulation of inflammatory response to wounding positive regulation of inflammatory response to wounding inflammatory response to wounding astrocyte differentiation astrocyte activation glial cell development astrocyte development gliogenesis astrocyte activation involved in immune response central nervous system development glial cell differentiation positive regulation of organelle organization positive regulation of vacuole organization regulation of vacuole organization regulation of organelle organization regulation of lysosome organization positive regulation of lysosome organization	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle vacuolar membrane intracellular anatomical structure lytic vacuole vacuole cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle vacuolar membrane intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane cytoplasm organelle membrane lysosome Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network cerebellar climbing fiber to Purkinje cell synapse neuron to neuron synapse synapse cell junction asymmetric synapse glutamatergic synapse excitatory synapse asymmetric, glutamatergic, excitatory synapse cell periphery plasma membrane intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen intracellular organelle lumen cytoplasmic vesicle vesicle lumen azurophil granule secretory granule lumen azurophil granule lumen organelle lumen secretory granule primary lysosome secretory vesicle endosome late endosome endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000118	Granulin	Domain
A	IPR039036	Granulin family	Family
A	IPR037277	Granulin superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P28799	neuronal ceroid lipofuscinosis 11 frontotemporal dementia dementia Frontotemporal Lobar Degeneration Grn-related frontotemporal lobar degeneration with Tdp43 inclusions neurodegenerative disease behavioral variant of frontotemporal dementia neuronal ceroid lipofuscinosis semantic dementia invasive ductal breast carcinoma lung carcinoma malignant glioma aphasia atypical teratoid rhabdoid tumor Parkinson disease neuronal ceroid lipofuscinosis 11 frontotemporal dementia dementia Frontotemporal Lobar Degeneration Grn-related frontotemporal lobar degeneration with Tdp43 inclusions neurodegenerative disease behavioral variant of frontotemporal dementia neuronal ceroid lipofuscinosis semantic dementia invasive ductal breast carcinoma lung carcinoma malignant glioma aphasia atypical teratoid rhabdoid tumor Parkinson disease brain disease primary progressive aphasia depressive disorder psoriasis inborn errors of metabolism juvenile dermatomyositis lysosomal storage disease MALT lymphoma arthrogryposis oligodendroglioma Pick disease congenital myasthenic syndrome diabetes mellitus schizophrenia Sjogren syndrome glioblastoma intellectual disability malignant ependymoma astrocytic tumor ovarian cancer bipolar disorder pilocytic astrocytoma progressive non-fluent aphasia Duchenne muscular dystrophy tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.