Annotations: 2JTN

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00412	e2jtnA2	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF00412	ECOD (1.6)
A	PF17916	e2jtnA5	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF17916	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00412	LIM domain (LIM)	LIM domain	This family represents two copies of the LIM structural domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LIM domain-binding protein 1, LIM/homeobox protein Lhx3	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding transcription coregulator binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding DNA-binding transcription factor binding transcription coregulator binding RNA polymerase II transcription regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity transcription coactivator binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	multicellular organismal process cellular developmental process cell differentiation in spinal cord neurogenesis multicellular organism development central nervous system neuron differentiation spinal cord development neuron differentiation cell differentiation anatomical structure development neuron fate specification system development developmental process neuron fate commitment multicellular organismal process cellular developmental process cell differentiation in spinal cord neurogenesis multicellular organism development central nervous system neuron differentiation spinal cord development neuron differentiation cell differentiation anatomical structure development neuron fate specification system development developmental process neuron fate commitment nervous system development cell fate specification spinal cord motor neuron cell fate specification generation of neurons central nervous system development ventral spinal cord development cellular process spinal cord motor neuron differentiation cell fate commitment placenta development animal organ development regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death ear development sensory organ development inner ear development dorsal/ventral pattern formation pattern specification process regionalization somatic motor neuron differentiation medial motor column neuron differentiation tube development respiratory tube development lung development respiratory system development axonogenesis cell projection organization motor neuron axon guidance plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon guidance axon development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron projection guidance neuron development head development forebrain development endocrine system development pituitary gland development gland development brain development diencephalon development prolactin secreting cell differentiation adenohypophysis development thyroid-stimulating hormone-secreting cell differentiation epithelial cell differentiation neuroepithelial cell differentiation epithelium development neuroendocrine cell differentiation tissue development glandular epithelial cell differentiation columnar/cuboidal epithelial cell differentiation cell fate commitment involved in pattern specification ventral spinal cord interneuron specification ventral spinal cord interneuron differentiation cell fate specification involved in pattern specification spinal cord dorsal/ventral patterning ventral spinal cord interneuron fate commitment spinal cord patterning spinal cord association neuron differentiation dorsal spinal cord development positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular metabolic process positive regulation of RNA metabolic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of DNA-templated transcription cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process positive regulation of biosynthetic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II somatotropin secreting cell differentiation positive regulation of transcription by RNA polymerase II	protein-containing complex transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001356	Homeobox domain	Domain
A	IPR009057	Homeobox-like domain superfamily	Homologous Superfamily
A	IPR017970	Homeobox, conserved site	Conserved Site
A	IPR049594	LIM/homeobox protein Lhx3/4-like, LIM domain 2	Domain
A	IPR001781	Zinc finger, LIM-type	Domain
A	IPR049593	LIM/homeobox protein Lhx3, LIM domain 1	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.