2JOK

NMR structure of the catalytic domain of guanine nucleotide exchange factor BopE from Burkholderia pseudomallei


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2joka_ All alpha proteins SopE-like GEF domain SopE-like GEF domain SopE-like GEF domain Effector protein BopE (Burkholderia pseudomallei ) [TaxId: 28450 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySopE-like GEF domain8022333 4002417 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySopE-like GEF domain8034713 3001205 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07487e2jokA1 A: alpha arraysX: SopE-like GEF domain (From Topology)H: SopE-like GEF domain (From Topology)T: SopE-like GEF domainF: PF07487ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.4120.10 Mainly Alpha Orthogonal Bundle SopE-like GEF fold SopE-like, GEF domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07487SopE GEF domain (SopE_GEF)SopE GEF domainThis family represents the C-terminal guanine nucleotide exchange factor (GEF) domain of SopE. Salmonella typhimurium employs a type III secretion system to inject bacterial toxins into the host cell cytosol. These toxins transiently activate Rho fam ...This family represents the C-terminal guanine nucleotide exchange factor (GEF) domain of SopE. Salmonella typhimurium employs a type III secretion system to inject bacterial toxins into the host cell cytosol. These toxins transiently activate Rho family GTP-binding protein-dependent signaling cascades to induce cytoskeletal rearrangements. SopE, can activate Cdc42, an essential component of the host cellular signaling cascade, in a Dbl-like fashion despite its lack of sequence similarity to Dbl-like proteins, the Rho-specific eukaryotic guanine nucleotide exchange factors [1].
Domain