2JKU | pdb_00002jku

Crystal structure of the N-terminal region of the biotin acceptor domain of human propionyl-CoA carboxylase

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FYVE_2	e2jkuA1	A: a/b three-layered sandwiches	X: Cation-proton antiporter	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: FYVE_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00364	Biotin-requiring enzyme (Biotin_lipoyl)	Biotin-requiring enzyme	This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL	CoA carboxylase activity propionyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding CoA carboxylase activity propionyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding biotin binding organic acid binding vitamin binding carboxylic acid binding monocarboxylic acid binding sulfur compound binding protein binding enzyme binding cation binding metal ion binding	oxoacid metabolic process carboxylic acid metabolic process branched-chain amino acid metabolic process amino acid metabolic process primary metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process fatty acid metabolic process monocarboxylic acid metabolic process lipid metabolic process short-chain fatty acid catabolic process lipid catabolic process oxoacid metabolic process carboxylic acid metabolic process branched-chain amino acid metabolic process amino acid metabolic process primary metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process fatty acid metabolic process monocarboxylic acid metabolic process lipid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process short-chain fatty acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process carboxylic acid catabolic process small molecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011764	Biotin carboxylation domain	Domain
A	IPR050856	Biotin-dependent Carboxylase Complex	Family
A	IPR005479	Carbamoyl phosphate synthase, ATP-binding domain	Domain
A	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
A	IPR041265	Propionyl-coenzyme A carboxylase, BT domain	Domain
A	IPR011053	Single hybrid motif	Homologous Superfamily
A	IPR001882	Biotin-binding site	Binding Site
A	IPR000089	Biotin/lipoyl attachment	Domain
A	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
A	IPR011761	ATP-grasp fold	Domain
A	IPR013815	ATP-grasp fold, subdomain 1	Homologous Superfamily
A	IPR005482	Biotin carboxylase, C-terminal	Domain
A	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P05165	propionic acidemia adrenal cortex carcinoma Epileptic encephalopathy inborn errors of metabolism interstitial cystitis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia attention deficit hyperactivity disorder, inattentive type glioblastoma inherited organic acidemia ovarian cancer tuberculosis breast cancer intellectual disability lung cancer propionic acidemia adrenal cortex carcinoma Epileptic encephalopathy inborn errors of metabolism interstitial cystitis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia attention deficit hyperactivity disorder, inattentive type glioblastoma inherited organic acidemia ovarian cancer tuberculosis breast cancer intellectual disability lung cancer pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.