Annotations: 2J8G

Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2j8ga1	All beta proteins	beta-hairpin stack	Cell wall binding repeat	Cell wall binding repeat	automated matches	(Streptococcus phage Cp1 ) [TaxId: 10747 ],	SCOPe (2.08)
A	d2j8ga2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	1,4-beta-N-acetylmuraminidase	automated matches	(Streptococcus phage Cp1 ) [TaxId: 10747 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cell wall binding repeat	8022258	4003163	SCOP2 (2022-06-29)
A	SCOP2 Family	1, 4-beta-N-acetylmuraminidase	8022259	4003326	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cell wall binding repeat	8034638	3000365	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8034639	3000313	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2j8gA1	A: beta duplicates or obligate multimers	X: beta-hairpin stack	H: beta-hairpin stack	T: beta-hairpin stack	F:	ECOD (v294.1)
A	Glyco_hydro_25	e2j8gA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Glyco_hydro_25	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.10.270.10	Mainly Beta	Ribbon	left handed beta-beta-3-solenoid	Cholin Binding	CATH (4.3.0)
A	2.20.120.10	Mainly Beta	Single Sheet	Multimodular pneumococcal cell wall endolysin, domain 3	Multimodular pneumococcal cell wall endolysin, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01183	Glycosyl hydrolases family 25 (Glyco_hydro_25)	Glycosyl hydrolases family 25		Domain
A	PF01473	Putative cell wall binding repeat (Choline_bind_1)	Putative cell wall binding repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LYSOZYME	hydrolase activity, acting on glycosyl bonds peptidoglycan muralytic activity hydrolase activity, hydrolyzing O-glycosyl compounds lysozyme activity hydrolase activity catalytic activity	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process aminoglycan metabolic process peptidoglycan metabolic process metabolic process cellular process macromolecule metabolic process symbiont-mediated cytolysis of host cell viral life cycle disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction viral release from host cell by cytolysis exit from host cell viral process cytolysis in another organism viral release from host cell disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing cell wall organization or biogenesis cell wall macromolecule catabolic process cell wall macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018077	Glycoside hydrolase, family 25 subgroup	Family
A	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A	IPR002053	Glycoside hydrolase, family 25	Family
A	IPR008270	Glycosyl hydrolases family 25, active site	Active Site
A	IPR018337	Cell wall/choline-binding repeat	Repeat

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