2J6Y | pdb_00002j6y

Structural and Functional Characterisation of partner switching regulating the environmental stress response in Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2j6ye_	All alpha proteins	KaiA/RbsU domain	KaiA/RbsU domain	Phosphoserine phosphatase RsbU, N-terminal domain	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2j6yd_	All alpha proteins	KaiA/RbsU domain	KaiA/RbsU domain	Phosphoserine phosphatase RsbU, N-terminal domain	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d2j6yc_	All alpha proteins	KaiA/RbsU domain	KaiA/RbsU domain	Phosphoserine phosphatase RsbU, N-terminal domain	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2j6yb_	All alpha proteins	KaiA/RbsU domain	KaiA/RbsU domain	Phosphoserine phosphatase RsbU, N-terminal domain	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d2j6ya_	All alpha proteins	KaiA/RbsU domain	KaiA/RbsU domain	Phosphoserine phosphatase RsbU, N-terminal domain	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	KaiA/RbsU domain	8041664	3000938	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	KaiA/RbsU domain	8041664	3000938	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	KaiA/RbsU domain	8041664	3000938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	KaiA/RbsU domain	8041664	3000938	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	KaiA/RbsU domain	8041664	3000938	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	HTHP	e2j6yE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
D	HTHP	e2j6yD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
C	HTHP	e2j6yC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
B	HTHP	e2j6yB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
A	LMWPc	e2j6yA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: LMWPc	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.1240.30	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)
D	1.10.1240.30	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)
C	1.10.1240.30	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)
B	1.10.1240.30	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)
A	1.10.1240.30	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF08673	Phosphoserine phosphatase RsbU, N-terminal domain (RsbU_N)	Phosphoserine phosphatase RsbU, N-terminal domain	RsbU is a phosphoserine phosphatase which acts as a positive regulator of the general stress-response factor of gram positive organisms, sigma-B. The phosphatase activity of RsbU is stimulated by association with the RsbT kinase. Deletions in the N ...	RsbU is a phosphoserine phosphatase which acts as a positive regulator of the general stress-response factor of gram positive organisms, sigma-B. The phosphatase activity of RsbU is stimulated by association with the RsbT kinase. Deletions in the N terminal domain are deleterious to the activity of RsbU [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	PHOSPHOSERINE PHOSPHATASE RSBU	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity L-phosphoserine phosphatase activity catalytic activity phosphoprotein phosphatase activity catalytic activity, acting on a protein	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR036457	PPM-type phosphatase-like domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR052016	Bacterial Sigma Factor Regulator	Family
A, B, C, D, E	IPR014787	Phosphoserine phosphatase RsbU, N-terminal	Domain
A, B, C, D, E	IPR017944	KaiA/RbsU helical domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR001932	PPM-type phosphatase-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.