2J28 | pdb_00002j28

MODEL OF E. COLI SRP BOUND TO 70S RNCS


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
P [auth H]d2j28h1 Alpha and beta proteins (a+b) Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
P [auth H]d2j28h2 Alpha and beta proteins (a+b) MbtH/L9 domain-like L9 N-domain-like Ribosomal protein L9 N-domain Ribosomal protein L9 N-domain (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
FA [auth X]d2j28x1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
E [auth 4]d2j2841 Small proteins Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
D [auth 3]d2j2831 Alpha and beta proteins (a+b) L35p-like L35p-like Ribosomal protein L35p Ribosomal protein L35p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
HA [auth Z]d2j28z1 Alpha and beta proteins (a+b) L28p-like L28p-like Ribosomal protein L31p Ribosomal protein L31p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
GA [auth Y]d2j28y1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Prokaryotic ribosomal protein L30 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
EA [auth W]d2j28w1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like Ribosomal L27 protein Ribosomal protein L27 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
DA [auth V]d2j28v1 All beta proteins Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
C [auth 2]d2j2821 Peptides Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p Ribosomal protein L34p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
CA [auth U]d2j28u1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
BA [auth T]d2j28t1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
AA [auth S]d2j28s1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Z [auth R]d2j28r1 All beta proteins L21p-like L21p-like Ribosomal protein L21p Ribosomal protein L21p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Y [auth Q]d2j28q1 All alpha proteins PABP domain-like Ribosomal protein L20 Ribosomal protein L20 Ribosomal protein L20 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
X [auth P]d2j28p1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal protein L19 Ribosomal protein L19 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
W [auth O]d2j28o1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
V [auth N]d2j28n1 Alpha and beta proteins (a+b) Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
U [auth M]d2j28m1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L16p Ribosomal protein L16p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
T [auth L]d2j28l1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
B [auth 1]d2j2811 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L33p Ribosomal protein L33p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
S [auth K]d2j28k1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
R [auth J]d2j28j1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Q [auth I]d2j28i1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Q [auth I]d2j28i2 Alpha and beta proteins (a+b) Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, N-terminal domain (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
O [auth G]d2j28g1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
N [auth F]d2j28f1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
M [auth E]d2j28e1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
L [auth D]d2j28d1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
K [auth C]d2j28c1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
K [auth C]d2j28c2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
A [auth 0]d2j2801 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L32p Ribosomal protein L32p (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth H]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
FA [auth X]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
H [auth 9]SCOP2B SuperfamilySRP/SRP receptor N-terminal domain-like 8056566 3001834 SCOP2B (2022-06-29)
H [auth 9]SCOP2B SuperfamilySimibi-like P-loop NTPases 8056567 3002018 SCOP2B (2022-06-29)
H [auth 9]SCOP2B SuperfamilySignal peptide binding domain-like 8056569 3001939 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
HA [auth Z]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
GA [auth Y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
EA [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
DA [auth V]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
CA [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
BA [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
AA [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
Z [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
Y [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
X [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
W [auth O]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
V [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
U [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
T [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
S [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
R [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
Q [auth I]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
Q [auth I]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
O [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
O [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
N [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
M [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
L [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
K [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
K [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
P [auth H]Ribosomal_L9_Ne2j28H2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
P [auth H]Ribosomal_L9_C_1e2j28H3 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
FA [auth X]Ribosomal_L29e2j28X1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
H [auth 9]SRP_SPBe2j2896 A: alpha arraysX: HTHH: HTHT: tri-helicalF: SRP_SPBECOD (1.6)
H [auth 9]SRP54_Ne2j2895 A: alpha bundlesX: Domain of the SRP/SRP receptor G proteins-likeH: Domain of the SRP/SRP receptor G-proteins (From Topology)T: Domain of the SRP/SRP receptor G-proteinsF: SRP54_NECOD (1.6)
H [auth 9]SRP54e2j2894 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: SRP54ECOD (1.6)
E [auth 4]Ribosomal_L36e2j2841 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
D [auth 3]Ribosomal_L35pe2j2831 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
HA [auth Z]Ribosomal_L31e2j28Z1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
GA [auth Y]Ribosomal_L30e2j28Y1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
EA [auth W]Ribosomal_L27e2j28W1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
DA [auth V]Ribosomal_L25pe2j28V1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
C [auth 2]Ribosomal_L34e2j2821 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
CA [auth U]ribosomal_L24_1e2j28U1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
BA [auth T]Ribosomal_L23_2e2j28T1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
AA [auth S]Ribosomal_L22e2j28S1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
Z [auth R]Ribosomal_L21pe2j28R1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
Y [auth Q]Ribosomal_L20e2j28Q1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
X [auth P]Ribosomal_L19e2j28P1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
W [auth O]Ribosomal_L18pe2j28O1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
V [auth N]Ribosomal_L17_1e2j28N1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
U [auth M]Ribosomal_L16e2j28M1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
T [auth L]Ribosomal_L27Ae2j28L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
B [auth 1]Ribosomal_L33e2j2811 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
S [auth K]Ribosomal_L14e2j28K1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
R [auth J]Ribosomal_L13e2j28J1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Q [auth I]Ribosomal_L11e2j28I4 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
Q [auth I]Ribosomal_L11_Ne2j28I3 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
O [auth G]Ribosomal_L6e2j28G2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
O [auth G]Ribosomal_L6_1e2j28G1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
N [auth F]Ribosomal_L5_Ce2j28F1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
M [auth E]Ribosomal_L4e2j28E2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
L [auth D]Ribosomal_L3e2j28D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
K [auth C]Ribosomal_L2_1e2j28C3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
K [auth C]Ribosomal_L2_Ce2j28C4 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
A [auth 0]Ribosomal_L32pe2j2801 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
P [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
P [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
FA [auth X]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
H [auth 9]PF00448SRP54-type protein, GTPase domain (SRP54)SRP54-type protein, GTPase domainThis family includes relatives of the G-domain of the SRP54 family of proteins. Domain
H [auth 9]PF02978Signal peptide binding domain (SRP_SPB)Signal peptide binding domainDomain
H [auth 9]PF02881SRP54-type protein, helical bundle domain (SRP54_N)SRP54-type protein, helical bundle domainDomain
E [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
D [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
HA [auth Z]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
GA [auth Y]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
EA [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
DA [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
C [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
CA [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
CA [auth U]PF00467KOW motif (KOW)KOW motif- Family
BA [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
AA [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
Z [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Y [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
X [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
W [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
V [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
U [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
T [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
B [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
S [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
R [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Q [auth I]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
Q [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
O [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
N [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
N [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
M [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
L [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
K [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
K [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
A [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P [auth H]50S ribosomal protein L9
FA [auth X]50S ribosomal protein L29
I [auth A]5S RIBOSOMAL RNA---
H [auth 9]Signal recognition particle protein
G [auth 8]4.5S SIGNAL RECOGNITION PARTICLE RNA---
F [auth 7]SIGNAL SEQUENCE
E [auth 4]50S ribosomal protein L36
D [auth 3]50S ribosomal protein L35
HA [auth Z]50S ribosomal protein L31
GA [auth Y]50S ribosomal protein L30
EA [auth W]50S ribosomal protein L27
DA [auth V]50S ribosomal protein L25
C [auth 2]50S ribosomal protein L34
CA [auth U]50S ribosomal protein L24
BA [auth T]50S ribosomal protein L23
AA [auth S]50S ribosomal protein L22
Z [auth R]50S ribosomal protein L21
Y [auth Q]50S ribosomal protein L20
X [auth P]50S ribosomal protein L19
W [auth O]50S ribosomal protein L18
V [auth N]50S ribosomal protein L17
U [auth M]50S ribosomal protein L16
T [auth L]50S ribosomal protein L15
B [auth 1]50S ribosomal protein L33
S [auth K]50S ribosomal protein L14
R [auth J]50S ribosomal protein L13
Q [auth I]50S ribosomal protein L11
O [auth G]50S ribosomal protein L6
N [auth F]50S ribosomal protein L5
M [auth E]50S ribosomal protein L4
L [auth D]50S ribosomal protein L3
K [auth C]50S ribosomal protein L2
J [auth B]23S RIBOSOMAL RNA---
A [auth 0]50S ribosomal protein L32

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
P [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
P [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
P [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
P [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
P [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
P [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
P [auth H]IPR000244Large ribosomal subunit protein bL9Family
FA [auth X]IPR050063Universal ribosomal protein uL29Family
FA [auth X]IPR001854Large ribosomal subunit protein uL29Family
FA [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
FA [auth X]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
H [auth 9]IPR000897Signal recognition particle, SRP54 subunit, GTPase domainDomain
H [auth 9]IPR022941Signal recognition particle, SRP54 subunitFamily
H [auth 9]IPR004125Signal recognition particle, SRP54 subunit, M-domainDomain
H [auth 9]IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyHomologous Superfamily
H [auth 9]IPR003593AAA+ ATPase domainDomain
H [auth 9]IPR004780Signal recognition particle proteinFamily
H [auth 9]IPR013822Signal recognition particle SRP54, helical bundleDomain
H [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth 9]IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyHomologous Superfamily
F [auth 7]IPR000732RhodopsinFamily
F [auth 7]IPR027430Visual pigments (opsins) retinal binding siteBinding Site
F [auth 7]IPR019477Rhodopsin, N-terminalDomain
F [auth 7]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
F [auth 7]IPR050125G-protein coupled receptor opsinsFamily
F [auth 7]IPR017452GPCR, rhodopsin-like, 7TMDomain
F [auth 7]IPR001760OpsinFamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 3]IPR001706Large ribosomal subunit protein bL35Family
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
HA [auth Z]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
HA [auth Z]IPR027491Large ribosomal subunit protein bL31 type AFamily
HA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
HA [auth Z]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
GA [auth Y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
GA [auth Y]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
GA [auth Y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
GA [auth Y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EA [auth W]IPR001684Large ribosomal subunit protein bL27Family
EA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
DA [auth V]IPR020055Ribosomal protein bL25, short-formFamily
DA [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
DA [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
DA [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
DA [auth V]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
C [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
CA [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth U]IPR003256Large ribosomal subunit protein uL24Family
CA [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth U]IPR005824KOWDomain
CA [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BA [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
AA [auth S]IPR001063Large ribosomal subunit protein uL22Family
AA [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
AA [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
AA [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Z [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
Z [auth R]IPR001787Large ribosomal subunit protein bL21Family
Z [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Z [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Y [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
Y [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Y [auth Q]IPR005813Large ribosomal subunit protein bL20Family
X [auth P]IPR001857Large ribosomal subunit protein bL19Family
X [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
X [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
X [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
W [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
V [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
V [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
V [auth N]IPR000456Large ribosomal subunit protein bL17Family
U [auth M]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
U [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
U [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
U [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
U [auth M]IPR047873Large ribosomal subunit protein uL16Family
T [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth L]IPR030878Large ribosomal subunit protein uL15Family
T [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
T [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
B [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
S [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
S [auth K]IPR000218Large ribosomal subunit protein uL14Family
S [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
S [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
R [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth J]IPR005822Large ribosomal subunit protein uL13Family
R [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
R [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Q [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
Q [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Q [auth I]IPR000911Ribosomal protein uL11Family
Q [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Q [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Q [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
Q [auth I]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
O [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
O [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
O [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
O [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
O [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
N [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth F]IPR002132Large ribosomal subunit protein uL5Family
N [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
M [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
M [auth E]IPR002136Large ribosomal subunit protein uL4Family
M [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
L [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
L [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
L [auth D]IPR000597Large ribosomal subunit protein uL3Family
K [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
K [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
K [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
K [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
K [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
K [auth C]IPR002171Large ribosomal subunit protein uL2Family
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily