Structure of yeast Elongation Factor 3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018510 | 3002020 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | EF3A 4-helical bundle domain-like | 8056486 | 3002350 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018511 | 3002020 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018511 | 3002020 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ARM repeat-like | 8018516 | 3000116 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Chromo domain-like | 8018520 | 3000161 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018511 | 3002020 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ARM repeat-like | 8018516 | 3000116 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018510 | 3002020 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018511 | 3002020 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Chromo domain-like | 8018520 | 3000161 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | EF3A 4-helical bundle domain-like | 8056486 | 3002350 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | KOG0062 | e2ix3A4 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: KOG0062 | ECOD (1.6) |
| A | KOG1242 | e2ix3A1 | A: alpha arrays | X: Helical bundle domain in elongation factor 3A (From Topology) | H: Helical bundle domain in elongation factor 3A (From Topology) | T: Helical bundle domain in elongation factor 3A | F: KOG1242 | ECOD (1.6) |
| A | KOG0213 | e2ix3A5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG0213 | ECOD (1.6) |
| A | ABC_tran | e2ix3A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
| B | KOG0062 | e2ix3B1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: KOG0062 | ECOD (1.6) |
| B | KOG1242 | e2ix3B5 | A: alpha arrays | X: Helical bundle domain in elongation factor 3A (From Topology) | H: Helical bundle domain in elongation factor 3A (From Topology) | T: Helical bundle domain in elongation factor 3A | F: KOG1242 | ECOD (1.6) |
| B | KOG0213 | e2ix3B3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG0213 | ECOD (1.6) |
| B | ABC_tran | e2ix3B2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
| A | 1.20.1390.20 | Mainly Alpha | Up-down Bundle | PWI domain | CATH (4.3.0) | |
| A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
| A | 2.40.50.990 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
| B | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
| B | 1.20.1390.20 | Mainly Alpha | Up-down Bundle | PWI domain | CATH (4.3.0) | |
| B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
| B | 2.40.50.990 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF17947 | Four helical bundle domain (4HB) | Four helical bundle domain | This domain is found in elongation factor 3A where it packs against the bottom of the concave face of the HEAT domain [1]. | Domain | |
| PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR017871 | ABC transporter-like, conserved site | Conserved Site | |
| IPR016024 | Armadillo-type fold | Homologous Superfamily | |
| IPR015688 | Elongation Factor 3, ABC2 domain, chromodomain-like insertion | Domain | |
| IPR040533 | Elongation factor 3, four helical bundle domain | Domain | |
| IPR047038 | Elongation Factor 3, chromodomain-like insertion superfamily | Homologous Superfamily | |
| IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
| IPR021133 | HEAT, type 2 | Repeat | |
| IPR011989 | Armadillo-like helical | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR050611 | ABCF protein | Family | |
| IPR047036 | Elongation factor 3, four helical bundle domain superfamily | Homologous Superfamily | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |














