2IQQ | pdb_00002iqq

The Crystal Structure of Iron, Sulfur-Dependent L-serine dehydratase from Legionella pneumophila subsp. pneumophila

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2iqqa1	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Serine metabolism enzymes domain	Serine dehydratase beta chain-like	L-serine dehydratase SdhL, N-terminal domain	(Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ],	SCOPe (2.08)
B	d2iqqb_	Alpha and beta proteins (a+b)	FwdE/GAPDH domain-like	Serine metabolism enzymes domain	Serine dehydratase beta chain-like	automated matches	(Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Serine dehydratase beta chain-like	8101648	4000160	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Serine metabolism enzymes domain	8101649	3000019	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Serine metabolism enzymes domain	8101649	3000019	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NTP_transf_2, PAP_NTPase	e2iqqA1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
B	NTP_transf_2, PAP_NTPase	e2iqqB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1330.90	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.90	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Iron, Sulfur-Dependent L-serine dehydratase	L-serine ammonia-lyase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	catabolic process metabolic process cellular process amino acid metabolic process primary metabolic process amino acid catabolic process monosaccharide metabolic process carbohydrate metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process catabolic process metabolic process cellular process amino acid metabolic process primary metabolic process amino acid catabolic process monosaccharide metabolic process carbohydrate metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process biosynthetic process small molecule metabolic process glucose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005130	Serine dehydratase-like, alpha subunit	Domain
A, B	IPR005131	Serine dehydratase beta chain	Domain
A, B	IPR029009	Allosteric substrate binding domain superfamily	Homologous Superfamily
A, B	IPR051318	Iron-sulphur-dependent L-serine dehydratase	Family
A, B	IPR004644	Iron-sulphur-dependent L-serine dehydratase single chain form	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.