Crystal structure of protein SPO2555 from Silicibacter pomeroyi, Pfam DUF1028
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2imhb1 | Alpha and beta proteins (a+b) | Ntn hydrolase-like | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | SPO2555-like | Hypothetical protein SPO2555 | (Ruegeria pomeroyi ) [TaxId: 89184 ], | SCOPe (2.08) |
| B | d2imhb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Ruegeria pomeroyi ) [TaxId: 89184 ], | SCOPe (2.08) |
| A | d2imha1 | Alpha and beta proteins (a+b) | Ntn hydrolase-like | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | SPO2555-like | Hypothetical protein SPO2555 | (Ruegeria pomeroyi ) [TaxId: 89184 ], | SCOPe (2.08) |
| A | d2imha3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Ruegeria pomeroyi ) [TaxId: 89184 ], | SCOPe (2.08) |
| A | d2imha2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Ruegeria pomeroyi ) [TaxId: 89184 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Class II glutamine amidotransferases | 8034544 | 3000131 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | SPO2555-like | 8022164 | 4002530 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Class II glutamine amidotransferases | 8034544 | 3000131 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | MarR | e2imhB1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (v294.1) |
| A | DUF1028 | e2imhA1 | A: few secondary structure elements | X: Ntn/PP2C | H: Ntn | T: SPO2555-like | F: DUF1028 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.60.20.10 | Alpha Beta | 4-Layer Sandwich | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | Aminohydrolase, N-terminal nucleophile (Ntn) domain | CATH (4.3.0) |
| A | 3.60.20.10 | Alpha Beta | 4-Layer Sandwich | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | Aminohydrolase, N-terminal nucleophile (Ntn) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF06267 | Family of unknown function (DUF1028) (DUF1028) | Family of unknown function (DUF1028) | Family of bacterial and archaeal proteins with unknown function. Some members are associated with a C-terminal peptidoglycan binding domain. So perhaps this could be an enzyme involved in peptidoglycan metabolism. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029055 | Nucleophile aminohydrolases, N-terminal | Homologous Superfamily | |
| IPR010430 | Protein of unknown function DUF1028 | Family |
